ARC Centre of Excellence for Plant Energy Biology

MPIC — mtHSP60 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT2G33210AT3G13860AT3G23990
Probe Set ID 245164_at257608_at256905_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 71 of 7372 of 7373 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 10.763208.7981510.68910
flower, stage 9 10.995209.2516211.12960
flower, stage 10/11 10.382208.7695910.66480
flower, stage 12 10.535908.6876110.68450
flower, stage 12, sepals 10.072708.4062910.36540
flower, stage 12, petals 10.347608.8833511.49250
flower, stage 12, stamens 9.284447.654649.76297
flower, stage 12, carpels 11.068609.2137711.46720
flower, stage 15 9.544058.071599.93742
flower, stage 15, pedicels 9.850498.419339.64252
flower, stage 15, sepals 9.585017.952929.32906
flower, stage 15, petals 8.744377.494299.69445
flower, stage 15, stamen 8.134927.132298.70160
flower, stage 15, carpels 10.784609.0213010.93430
mature pollen 8.557357.660829.02184
cotyledon 9.480857.873879.22193
silique, with seeds stage 3; mid globular to early heart embryo 9.674028.456359.63702
silique, wth seeds stage 4; early to late heart embryo 9.710008.343059.91949
silique, with seeds stage 5; late heart to mid torpedo embryo 9.180008.080269.59620
seed, stage 6; mid to late torpedo embryos 8.958628.042219.52980
seed, stage 7; late torpedo to early walking-stick embryo 8.462857.937839.21439
seed, stage 8; walking-stick to early curled-cotyledons embryo 7.482337.992759.35514
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 7.554308.225509.39747
seed, stage 10; green-cotyledons embryo 7.567188.151979.47754
Germination - Harvested seed, collected before dessication 8.651199.5794411.59630
Germination - 0 h dry seed, 15d after collection 8.563019.3886911.49260
Germination - 1 h strat 9.2688210.1715011.53670
Germination - 12 h strat 9.7088410.1156011.31740
Germination - 48 h strat 12.3913011.5884012.88780
Germination - 1 h SL 12.4308011.7749013.18740
Germination - 6 h SL 12.3712011.8529013.52030
Germination - 12 h SL 12.1025011.4118013.12130
Germination - 24 h SL 11.7417010.9220012.87040
Germination - 48 h SL 11.1650010.1462011.92500
hypocotyl 10.667608.9665010.51190
seedling, green parts 10.929909.5380911.30580
seedling, green parts 9.077107.972299.55566
seedling, green parts 9.701028.3196210.18880
seedling, green parts 9.064108.027009.25525
seedling, green parts 9.251338.110139.63363
shoot apex, vegetative + young leaves 11.281009.4837711.37040
leaves 1 + 2 10.214308.7020410.26330
shoot apex, vegetative 11.737609.9167211.78960
shoot apex, transition (before bolting) 11.627809.6697311.76720
shoot apex, inflorescence (after bolting) 11.472309.7101511.47730
rosette leaf #4, 1 cm long 10.858509.2406810.83870
rosette leaf # 2 8.999707.737558.77806
rosette leaf # 4 9.320047.897149.13323
rosette leaf # 6 9.606308.012219.54278
rosette leaf # 8 9.853698.196099.85994
rosette leaf # 10 10.072808.3903910.11830
rosette leaf # 12 10.493308.7912310.65100
leaf 7, petiole 10.017908.350519.99164
leaf 7, proximal half 9.573187.959249.48725
leaf 7, distal half 9.431137.666579.11870
developmental drift, entire rosette after transition to flowering, but before bolting 10.009108.283439.96619
developmental drift, entire rosette after transition to flowering, but before bolting 10.000808.2969810.04500
developmental drift, entire rosette after transition to flowering, but before bolting 10.046408.466469.88545
senescing leaf 8.592568.413989.04041
cauline leaf 8.511567.731708.41915
vegetative rosette 10.083808.7350410.40060
vegetative rosette 10.661809.2756010.87670
vegetative rosette 10.891709.5042711.11080
leaf 9.585738.243569.44509
stem, 2nd internode 8.276237.340718.08098
stem, 1st node 9.341228.087118.75184
root 10.659608.8957010.99380
root 10.461508.9015710.89980
root 10.520709.0138810.93710
root 11.256909.6668811.60100
roots 10.887909.3429711.62470
root 9.854298.6281710.40050
root 9.918328.4281210.47680
Rice RNA Transcript Expression  
Locus LOC_Os03g04970.1LOC_Os05g46290.1LOC_Os10g32550.1
Probe Set ID Os.8911.1.S1_atOs.22773.1.S1_atOs.10551.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 4141 of 4141 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 5.977897.8378311.18950
Inflorescence (P2, 3-5 cm) 5.982067.9676011.24212
Inflorescence (P3, 5-10 cm) 5.872477.3214710.41723
Inflorescence (P4, 10-15 cm) 5.446826.675439.82948
Inflorescence (P5, 15-22 cm) 6.180666.706589.85522
Inflorescence (P6, 22-30 cm) 6.076066.599479.80053
Unpollenated stigma at antithesis 6.282798.5521611.83808
Ovary at antithesis 6.346859.1360511.70109
Embryo. 7.907297.2860411.49504
Endosperm. 8.504427.5761810.95312
Seed (S1, 0-2 days after pollenation) 5.716947.3241210.39310
Seed (S2, 3-4 days after pollenation) 5.442387.034229.22544
Seed (S3, 5-10 days after pollenation) 5.406296.8165410.00879
Seed (S4, 11-20 days after pollenation) 5.099526.170579.05322
Seed (S5, 21-29 days after pollenation) 5.608997.590789.99299
Dry seed 5.848498.7573611.30481
1h seed (aerobic) 5.664798.3854911.01109
1h seed (anaerobic) 5.878018.6865011.19741
3h seed (aerobic) 5.225217.6288410.59186
3h seed (anaerobic) 5.487118.0373110.82611
12h seed (aerobic) 7.508479.2686812.31114
12h seed (anaerobic) 7.235399.1765012.75640
24h (aerobic) 7.404429.2231112.28874
24h seed (anaerobic) 6.848588.7637012.45010
27h (aerobic) 7.490049.5963812.01665
27h (anaerobic) 7.019828.9887311.87527
30h (aerobic) 7.564099.3532911.99547
30h (anaerobic) 7.027058.7556011.68499
27h (24h N + 3h A) 7.836629.7260112.31966
27h (24h A + 3h N) 7.131529.0012811.65573
30h (24h N + 6h A) 7.856819.6968912.19407
30h (24h A + 6h N) 7.200908.7107411.90202
Aerobic grown coleoptiles (4 days) 4.910054.078607.86002
Anoxic grown coleoptiles (4 days) 5.880475.425329.88931
10-day old seedling 7.901467.9122411.86837
Leaf from 7-day seedling 7.370427.4334410.57673
Mature leaf 6.106365.443948.15768
Young Leaf 7.847657.917579.52876
Semi Apical Meristem 8.610939.4281512.12938
Root from 7-day old seedling 7.619678.5920911.50436
Root from 7-day Seedling 8.968018.8553411.95013