MPIC
RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm) | 2 | 7 | 12 | Global expression heatmaps (Excel): Arabidopsis Rice |
| Arabidopsis RNA Transcript Expression | |
|---|---|
| Locus | AT5G27280 |
| Probe Set ID | 246791_at |
| Developmental Expression | Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in | 72 of 73 |
| Stress expression | Control, Drought, Salt, Cold, Heat |
| flower 2 | 7.65495 |
| flower, stage 9 | 7.19415 |
| flower, stage 10/11 | 7.72106 |
| flower, stage 12 | 8.08349 |
| flower, stage 12, sepals | 9.99927 |
| flower, stage 12, petals | 8.30595 |
| flower, stage 12, stamens | 9.03546 |
| flower, stage 12, carpels | 7.11002 |
| flower, stage 15 | 9.00635 |
| flower, stage 15, pedicels | 8.39561 |
| flower, stage 15, sepals | 10.81370 |
| flower, stage 15, petals | 9.90182 |
| flower, stage 15, stamen | 9.61309 |
| flower, stage 15, carpels | 7.27996 |
| mature pollen | 7.76805 |
| cotyledon | 10.79560 |
| silique, with seeds stage 3; mid globular to early heart embryo | 7.73995 |
| silique, wth seeds stage 4; early to late heart embryo | 9.33488 |
| silique, with seeds stage 5; late heart to mid torpedo embryo | 9.31700 |
| seed, stage 6; mid to late torpedo embryos | 8.77406 |
| seed, stage 7; late torpedo to early walking-stick embryo | 9.20033 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo | 9.22925 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo | 9.64537 |
| seed, stage 10; green-cotyledons embryo | 9.77099 |
| Germination - Harvested seed, collected before dessication | 11.26850 |
| Germination - 0 h dry seed, 15d after collection | 11.26160 |
| Germination - 1 h strat | 11.18550 |
| Germination - 12 h strat | 10.06580 |
| Germination - 48 h strat | 8.59459 |
| Germination - 1 h SL | 7.83541 |
| Germination - 6 h SL | 7.45696 |
| Germination - 12 h SL | 7.14171 |
| Germination - 24 h SL | 6.85636 |
| Germination - 48 h SL | 7.58156 |
| hypocotyl | 7.53705 |
| seedling, green parts | 7.94835 |
| seedling, green parts | 9.52947 |
| seedling, green parts | 9.56869 |
| seedling, green parts | 9.36024 |
| seedling, green parts | 9.36693 |
| shoot apex, vegetative + young leaves | 7.51600 |
| leaves 1 + 2 | 9.34090 |
| shoot apex, vegetative | 6.89729 |
| shoot apex, transition (before bolting) | 6.96066 |
| shoot apex, inflorescence (after bolting) | 6.86519 |
| rosette leaf #4, 1 cm long | 8.81512 |
| rosette leaf # 2 | 10.30600 |
| rosette leaf # 4 | 10.42700 |
| rosette leaf # 6 | 10.42130 |
| rosette leaf # 8 | 10.12200 |
| rosette leaf # 10 | 9.76139 |
| rosette leaf # 12 | 9.15564 |
| leaf 7, petiole | 9.41899 |
| leaf 7, proximal half | 10.30160 |
| leaf 7, distal half | 10.69060 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 10.04240 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 9.90910 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 9.86978 |
| senescing leaf | 9.83143 |
| cauline leaf | 10.61910 |
| vegetative rosette | 9.57959 |
| vegetative rosette | 8.61803 |
| vegetative rosette | 8.28727 |
| leaf | 10.14870 |
| stem, 2nd internode | 10.04100 |
| stem, 1st node | 8.92540 |
| root | 7.59705 |
| root | 7.46509 |
| root | 7.56445 |
| root | 6.84202 |
| roots | 6.90515 |
| root | 7.95037 |
| root | 7.91846 |
| Rice RNA Transcript Expression | |
|---|---|
| Locus | LOC_Os02g57430.1 |
| Probe Set ID | Os.33749.1.S1_at |
| Developmental Expression | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower |
| No. of tissues expressed in | 41 of 41 |
| Stress expression | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat |
| Young inflorescence (P1, upto 3 cm) | 8.56126 |
| Inflorescence (P2, 3-5 cm) | 8.31423 |
| Inflorescence (P3, 5-10 cm) | 8.71243 |
| Inflorescence (P4, 10-15 cm) | 8.49352 |
| Inflorescence (P5, 15-22 cm) | 7.63653 |
| Inflorescence (P6, 22-30 cm) | 8.88813 |
| Unpollenated stigma at antithesis | 7.71434 |
| Ovary at antithesis | 6.78904 |
| Embryo. | 8.42547 |
| Endosperm. | 8.74170 |
| Seed (S1, 0-2 days after pollenation) | 7.59695 |
| Seed (S2, 3-4 days after pollenation) | 7.18373 |
| Seed (S3, 5-10 days after pollenation) | 7.33533 |
| Seed (S4, 11-20 days after pollenation) | 7.32066 |
| Seed (S5, 21-29 days after pollenation) | 8.00743 |
| Dry seed | 8.21083 |
| 1h seed (aerobic) | 8.47458 |
| 1h seed (anaerobic) | 8.49913 |
| 3h seed (aerobic) | 8.97439 |
| 3h seed (anaerobic) | 9.09197 |
| 12h seed (aerobic) | 7.59736 |
| 12h seed (anaerobic) | 7.99161 |
| 24h (aerobic) | 7.25379 |
| 24h seed (anaerobic) | 7.10184 |
| 27h (aerobic) | 7.70584 |
| 27h (anaerobic) | 7.56473 |
| 30h (aerobic) | 7.63428 |
| 30h (anaerobic) | 7.56382 |
| 27h (24h N + 3h A) | 7.78207 |
| 27h (24h A + 3h N) | 8.05922 |
| 30h (24h N + 6h A) | 7.90041 |
| 30h (24h A + 6h N) | 7.75747 |
| Aerobic grown coleoptiles (4 days) | 5.29743 |
| Anoxic grown coleoptiles (4 days) | 6.89768 |
| 10-day old seedling | 6.86490 |
| Leaf from 7-day seedling | 7.40525 |
| Mature leaf | 9.72412 |
| Young Leaf | 9.41167 |
| Semi Apical Meristem | 8.13590 |
| Root from 7-day old seedling | 7.74845 |
| Root from 7-day Seedling | 8.10132 |