MPIC — UNKNOWN-PRAT-5 RNA Expression
RNA transcript expression levels are shown for Arabidopsis and rice,
representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm)
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2
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7
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12
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Global expression heatmaps (Excel): Arabidopsis Rice
|
| Arabidopsis RNA Transcript Expression |
|
| Locus |
AT3G25120 |
| Probe Set ID |
257818_at |
| Developmental Expression |
Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in |
72 of 73 |
| Stress expression |
Control, Drought, Salt, Cold, Heat |
| flower 2 |
8.04730 |
| flower, stage 9 |
7.91175 |
| flower, stage 10/11 |
7.74848 |
| flower, stage 12 |
7.97939 |
| flower, stage 12, sepals |
8.07456 |
| flower, stage 12, petals |
7.77976 |
| flower, stage 12, stamens |
7.77446 |
| flower, stage 12, carpels |
8.21918 |
| flower, stage 15 |
7.66586 |
| flower, stage 15, pedicels |
8.07011 |
| flower, stage 15, sepals |
7.68261 |
| flower, stage 15, petals |
7.07774 |
| flower, stage 15, stamen |
6.82841 |
| flower, stage 15, carpels |
8.29805 |
| mature pollen |
7.20597 |
| cotyledon |
7.96554 |
| silique, with seeds stage 3; mid globular to early heart embryo |
7.87273 |
| silique, wth seeds stage 4; early to late heart embryo |
7.52091 |
| silique, with seeds stage 5; late heart to mid torpedo embryo |
7.77739 |
| seed, stage 6; mid to late torpedo embryos |
7.91611 |
| seed, stage 7; late torpedo to early walking-stick embryo |
8.15205 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo |
8.79497 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo |
8.35616 |
| seed, stage 10; green-cotyledons embryo |
8.91283 |
| Germination - Harvested seed, collected before dessication |
10.33810 |
| Germination - 0 h dry seed, 15d after collection |
10.46000 |
| Germination - 1 h strat |
10.33140 |
| Germination - 12 h strat |
10.72140 |
| Germination - 48 h strat |
10.57050 |
| Germination - 1 h SL |
10.50300 |
| Germination - 6 h SL |
11.01740 |
| Germination - 12 h SL |
10.82270 |
| Germination - 24 h SL |
10.47050 |
| Germination - 48 h SL |
9.61694 |
| hypocotyl |
8.02595 |
| seedling, green parts |
8.12468 |
| seedling, green parts |
7.72243 |
| seedling, green parts |
7.99167 |
| seedling, green parts |
7.73149 |
| seedling, green parts |
7.62669 |
| shoot apex, vegetative + young leaves |
8.32396 |
| leaves 1 + 2 |
7.95109 |
| shoot apex, vegetative |
8.60600 |
| shoot apex, transition (before bolting) |
8.50663 |
| shoot apex, inflorescence (after bolting) |
8.12450 |
| rosette leaf #4, 1 cm long |
8.93071 |
| rosette leaf # 2 |
8.01266 |
| rosette leaf # 4 |
8.00037 |
| rosette leaf # 6 |
8.13195 |
| rosette leaf # 8 |
8.21895 |
| rosette leaf # 10 |
8.32223 |
| rosette leaf # 12 |
8.26295 |
| leaf 7, petiole |
8.42779 |
| leaf 7, proximal half |
8.14007 |
| leaf 7, distal half |
8.03290 |
| developmental drift, entire rosette after transition to flowering, but before bolting |
7.96683 |
| developmental drift, entire rosette after transition to flowering, but before bolting |
8.16570 |
| developmental drift, entire rosette after transition to flowering, but before bolting |
8.26600 |
| senescing leaf |
7.44063 |
| cauline leaf |
7.62827 |
| vegetative rosette |
8.13930 |
| vegetative rosette |
8.08836 |
| vegetative rosette |
8.22293 |
| leaf |
7.81013 |
| stem, 2nd internode |
7.66142 |
| stem, 1st node |
7.72119 |
| root |
8.23137 |
| root |
7.97685 |
| root |
7.87903 |
| root |
8.16401 |
| roots |
8.35477 |
| root |
8.01354 |
| root |
8.02813 |
| Rice RNA Transcript Expression |
|
| Locus |
LOC_Os04g30740.1 |
| Probe Set ID |
Os.54218.1.S1_at |
| Developmental Expression |
Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower |
| No. of tissues expressed in |
28 of 41 |
| Stress expression |
Control (H), Heat |
| Young inflorescence (P1, upto 3 cm) |
2.47914 |
| Inflorescence (P2, 3-5 cm) |
2.46291 |
| Inflorescence (P3, 5-10 cm) |
2.43960 |
| Inflorescence (P4, 10-15 cm) |
2.44798 |
| Inflorescence (P5, 15-22 cm) |
2.44298 |
| Inflorescence (P6, 22-30 cm) |
3.60322 |
| Unpollenated stigma at antithesis |
8.05414 |
| Ovary at antithesis |
8.02444 |
| Embryo. |
6.90587 |
| Endosperm. |
6.26138 |
| Seed (S1, 0-2 days after pollenation) |
2.47913 |
| Seed (S2, 3-4 days after pollenation) |
3.38497 |
| Seed (S3, 5-10 days after pollenation) |
2.46181 |
| Seed (S4, 11-20 days after pollenation) |
2.51804 |
| Seed (S5, 21-29 days after pollenation) |
2.49081 |
| Dry seed |
8.21318 |
| 1h seed (aerobic) |
8.16063 |
| 1h seed (anaerobic) |
8.22498 |
| 3h seed (aerobic) |
7.81832 |
| 3h seed (anaerobic) |
8.04626 |
| 12h seed (aerobic) |
7.64519 |
| 12h seed (anaerobic) |
7.81886 |
| 24h (aerobic) |
7.35670 |
| 24h seed (anaerobic) |
7.75185 |
| 27h (aerobic) |
7.73282 |
| 27h (anaerobic) |
8.07527 |
| 30h (aerobic) |
7.74081 |
| 30h (anaerobic) |
8.10620 |
| 27h (24h N + 3h A) |
8.11482 |
| 27h (24h A + 3h N) |
7.86619 |
| 30h (24h N + 6h A) |
8.12216 |
| 30h (24h A + 6h N) |
7.92779 |
| Aerobic grown coleoptiles (4 days) |
5.19178 |
| Anoxic grown coleoptiles (4 days) |
5.58211 |
| 10-day old seedling |
6.63489 |
| Leaf from 7-day seedling |
6.39489 |
| Mature leaf |
2.45295 |
| Young Leaf |
2.44422 |
| Semi Apical Meristem |
2.41791 |
| Root from 7-day old seedling |
2.41849 |
| Root from 7-day Seedling |
6.77347 |
