ARC Centre of Excellence for Plant Energy Biology

MPIC — UNKNOWN-PRAT-3,UNKNOWN-PRAT-4 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT5G24650AT3G49560
Probe Set ID 249751_at252270_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 73 of 7372 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 10.5428010.10770
flower, stage 9 10.366409.63888
flower, stage 10/11 10.4487010.10630
flower, stage 12 10.213809.38049
flower, stage 12, sepals 10.117209.40923
flower, stage 12, petals 9.482668.95075
flower, stage 12, stamens 10.007008.54397
flower, stage 12, carpels 10.105509.31872
flower, stage 15 9.420319.13049
flower, stage 15, pedicels 10.135509.76249
flower, stage 15, sepals 9.832399.25678
flower, stage 15, petals 9.790368.78331
flower, stage 15, stamen 9.490938.47928
flower, stage 15, carpels 10.099209.57839
mature pollen 8.617086.75257
cotyledon 9.936799.79601
silique, with seeds stage 3; mid globular to early heart embryo 9.914599.23962
silique, wth seeds stage 4; early to late heart embryo 9.862388.61779
silique, with seeds stage 5; late heart to mid torpedo embryo 9.612708.44508
seed, stage 6; mid to late torpedo embryos 9.268398.52718
seed, stage 7; late torpedo to early walking-stick embryo 9.297428.46942
seed, stage 8; walking-stick to early curled-cotyledons embryo 9.352509.58181
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 9.596909.75842
seed, stage 10; green-cotyledons embryo 9.365739.66891
Germination - Harvested seed, collected before dessication 10.9867012.41600
Germination - 0 h dry seed, 15d after collection 10.9658012.57140
Germination - 1 h strat 10.8979012.24930
Germination - 12 h strat 11.2040012.16340
Germination - 48 h strat 11.5978012.18060
Germination - 1 h SL 11.4817012.26380
Germination - 6 h SL 11.1626011.88840
Germination - 12 h SL 11.2833011.72600
Germination - 24 h SL 10.8689011.15920
Germination - 48 h SL 10.9980011.28060
hypocotyl 9.218408.92310
seedling, green parts 10.3835010.05500
seedling, green parts 9.777509.31219
seedling, green parts 9.829819.52223
seedling, green parts 9.699349.27717
seedling, green parts 9.709099.13513
shoot apex, vegetative + young leaves 10.6338010.38440
leaves 1 + 2 10.7344010.38080
shoot apex, vegetative 10.4312010.02960
shoot apex, transition (before bolting) 10.228909.75894
shoot apex, inflorescence (after bolting) 10.165609.66149
rosette leaf #4, 1 cm long 10.8704010.50280
rosette leaf # 2 9.651479.66335
rosette leaf # 4 9.620359.64884
rosette leaf # 6 9.632649.74697
rosette leaf # 8 10.013109.82209
rosette leaf # 10 10.1276010.03500
rosette leaf # 12 10.2965010.31220
leaf 7, petiole 9.910109.58211
leaf 7, proximal half 10.125609.80760
leaf 7, distal half 9.909969.73747
developmental drift, entire rosette after transition to flowering, but before bolting 9.825409.72469
developmental drift, entire rosette after transition to flowering, but before bolting 9.926329.78721
developmental drift, entire rosette after transition to flowering, but before bolting 9.715619.56985
senescing leaf 9.653639.08804
cauline leaf 9.476319.23204
vegetative rosette 10.2275010.11740
vegetative rosette 10.3749010.33910
vegetative rosette 10.3786010.29440
leaf 10.235809.96120
stem, 2nd internode 9.025568.59910
stem, 1st node 8.987268.65606
root 9.330328.96384
root 8.956188.65313
root 9.110568.82513
root 9.232088.43777
roots 9.029628.28569
root 8.920708.54245
root 9.035638.63363
Rice RNA Transcript Expression  
Locus LOC_Os02g32530.1LOC_Os04g33220.1LOC_Os12g33020.1
Probe Set ID Os.39005.1.S1_s_atOs.9140.1.S1_atOs.6051.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 4141 of 4141 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 10.0386211.246649.14765
Inflorescence (P2, 3-5 cm) 9.9493311.579279.35890
Inflorescence (P3, 5-10 cm) 9.8040611.013779.14762
Inflorescence (P4, 10-15 cm) 10.0092410.817999.00380
Inflorescence (P5, 15-22 cm) 10.672839.771809.38842
Inflorescence (P6, 22-30 cm) 10.2265410.449229.16364
Unpollenated stigma at antithesis 9.6910110.413089.59236
Ovary at antithesis 10.2711611.601499.80499
Embryo. 8.8156912.0230910.86302
Endosperm. 10.6701710.580948.41780
Seed (S1, 0-2 days after pollenation) 9.241939.655687.85840
Seed (S2, 3-4 days after pollenation) 9.330949.814367.54793
Seed (S3, 5-10 days after pollenation) 9.397039.216087.04044
Seed (S4, 11-20 days after pollenation) 9.203669.273867.09432
Seed (S5, 21-29 days after pollenation) 9.639999.879078.18221
Dry seed 8.9920011.0073510.14801
1h seed (aerobic) 9.2147110.979889.93018
1h seed (anaerobic) 9.3462310.9333610.01234
3h seed (aerobic) 8.7491510.857589.25167
3h seed (anaerobic) 8.9116410.855899.70691
12h seed (aerobic) 9.1023510.666988.29875
12h seed (anaerobic) 9.0405810.633367.84238
24h (aerobic) 9.0828910.504828.54692
24h seed (anaerobic) 8.9600310.585478.43660
27h (aerobic) 9.7607510.996908.08846
27h (anaerobic) 9.5267411.056778.35584
30h (aerobic) 9.6399310.956918.25447
30h (anaerobic) 9.5731711.118558.35027
27h (24h N + 3h A) 9.5582611.061848.41634
27h (24h A + 3h N) 9.5236311.268778.25354
30h (24h N + 6h A) 9.4042011.070118.33427
30h (24h A + 6h N) 9.4861111.289848.49231
Aerobic grown coleoptiles (4 days) 8.057427.663037.06879
Anoxic grown coleoptiles (4 days) 7.939139.858646.92168
10-day old seedling 10.5783110.970689.82280
Leaf from 7-day seedling 10.1209511.054569.79536
Mature leaf 9.7741010.234799.37435
Young Leaf 10.702049.705278.82232
Semi Apical Meristem 9.0485010.482039.55851
Root from 7-day old seedling 10.269469.309069.05841
Root from 7-day Seedling 10.4030310.565799.33148