MPIC
RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm) | 2 | 7 | 12 | Global expression heatmaps (Excel): Arabidopsis Rice |
| Arabidopsis RNA Transcript Expression | |
|---|---|
| Locus | AT4G26670 |
| Probe Set ID | 253981_at |
| Developmental Expression | Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in | 72 of 73 |
| Stress expression | Control, Drought, Salt, Cold, Heat |
| flower 2 | 8.35961 |
| flower, stage 9 | 8.35876 |
| flower, stage 10/11 | 8.08456 |
| flower, stage 12 | 7.90717 |
| flower, stage 12, sepals | 7.96400 |
| flower, stage 12, petals | 8.30025 |
| flower, stage 12, stamens | 6.53244 |
| flower, stage 12, carpels | 8.32795 |
| flower, stage 15 | 7.76123 |
| flower, stage 15, pedicels | 9.50927 |
| flower, stage 15, sepals | 6.22323 |
| flower, stage 15, petals | 7.15816 |
| flower, stage 15, stamen | 6.71053 |
| flower, stage 15, carpels | 8.78356 |
| mature pollen | 4.02249 |
| cotyledon | 8.56843 |
| silique, with seeds stage 3; mid globular to early heart embryo | 7.59945 |
| silique, wth seeds stage 4; early to late heart embryo | 8.24645 |
| silique, with seeds stage 5; late heart to mid torpedo embryo | 8.19505 |
| seed, stage 6; mid to late torpedo embryos | 8.28561 |
| seed, stage 7; late torpedo to early walking-stick embryo | 8.18649 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo | 8.00993 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo | 7.82329 |
| seed, stage 10; green-cotyledons embryo | 7.87023 |
| Germination - Harvested seed, collected before dessication | 10.62390 |
| Germination - 0 h dry seed, 15d after collection | 10.49660 |
| Germination - 1 h strat | 10.27080 |
| Germination - 12 h strat | 10.34940 |
| Germination - 48 h strat | 10.84020 |
| Germination - 1 h SL | 11.03560 |
| Germination - 6 h SL | 11.74930 |
| Germination - 12 h SL | 11.67820 |
| Germination - 24 h SL | 10.46580 |
| Germination - 48 h SL | 10.48810 |
| hypocotyl | 7.90130 |
| seedling, green parts | 9.67756 |
| seedling, green parts | 8.47015 |
| seedling, green parts | 8.91687 |
| seedling, green parts | 8.53344 |
| seedling, green parts | 8.19944 |
| shoot apex, vegetative + young leaves | 9.76542 |
| leaves 1 + 2 | 9.58087 |
| shoot apex, vegetative | 9.54909 |
| shoot apex, transition (before bolting) | 9.54959 |
| shoot apex, inflorescence (after bolting) | 8.75663 |
| rosette leaf #4, 1 cm long | 9.99618 |
| rosette leaf # 2 | 8.03184 |
| rosette leaf # 4 | 8.31335 |
| rosette leaf # 6 | 8.73363 |
| rosette leaf # 8 | 9.46341 |
| rosette leaf # 10 | 9.94380 |
| rosette leaf # 12 | 10.32880 |
| leaf 7, petiole | 9.36526 |
| leaf 7, proximal half | 9.29387 |
| leaf 7, distal half | 8.97016 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 9.47190 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 9.15660 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 9.05507 |
| senescing leaf | 7.14358 |
| cauline leaf | 7.15191 |
| vegetative rosette | 9.72864 |
| vegetative rosette | 9.77097 |
| vegetative rosette | 9.66059 |
| leaf | 9.75679 |
| stem, 2nd internode | 7.54571 |
| stem, 1st node | 8.03794 |
| root | 8.11548 |
| root | 8.04671 |
| root | 7.91082 |
| root | 8.28973 |
| roots | 8.23458 |
| root | 7.77255 |
| root | 7.74657 |
| Rice RNA Transcript Expression | ||
|---|---|---|
| Locus | LOC_Os03g09870.1 | LOC_Os10g22039.1 |
| Probe Set ID | OsAffx.3179.1.S1_s_at | Os.10912.1.S1_at |
| Developmental Expression | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower |
| No. of tissues expressed in | 41 of 41 | 41 of 41 |
| Stress expression | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat |
| Young inflorescence (P1, upto 3 cm) | 10.21494 | 11.56443 |
| Inflorescence (P2, 3-5 cm) | 10.16164 | 11.63673 |
| Inflorescence (P3, 5-10 cm) | 10.25264 | 11.47884 |
| Inflorescence (P4, 10-15 cm) | 9.65843 | 11.12508 |
| Inflorescence (P5, 15-22 cm) | 9.23482 | 10.84182 |
| Inflorescence (P6, 22-30 cm) | 9.54365 | 10.53042 |
| Unpollenated stigma at antithesis | 8.96440 | 11.78485 |
| Ovary at antithesis | 10.18105 | 12.62855 |
| Embryo. | 11.36317 | 11.94586 |
| Endosperm. | 12.12987 | 12.13418 |
| Seed (S1, 0-2 days after pollenation) | 9.18547 | 9.22083 |
| Seed (S2, 3-4 days after pollenation) | 9.37129 | 10.72512 |
| Seed (S3, 5-10 days after pollenation) | 9.65294 | 10.23245 |
| Seed (S4, 11-20 days after pollenation) | 9.63607 | 9.45314 |
| Seed (S5, 21-29 days after pollenation) | 9.68194 | 9.17205 |
| Dry seed | 10.40960 | 10.59080 |
| 1h seed (aerobic) | 10.53725 | 10.47716 |
| 1h seed (anaerobic) | 10.49476 | 10.59709 |
| 3h seed (aerobic) | 10.74821 | 10.01800 |
| 3h seed (anaerobic) | 10.54583 | 10.36813 |
| 12h seed (aerobic) | 9.35602 | 9.51505 |
| 12h seed (anaerobic) | 9.27199 | 9.80865 |
| 24h (aerobic) | 8.67483 | 9.56180 |
| 24h seed (anaerobic) | 8.62120 | 10.04339 |
| 27h (aerobic) | 9.57306 | 10.06201 |
| 27h (anaerobic) | 9.51427 | 10.46559 |
| 30h (aerobic) | 9.46134 | 10.04336 |
| 30h (anaerobic) | 9.50062 | 10.62523 |
| 27h (24h N + 3h A) | 9.81243 | 9.84339 |
| 27h (24h A + 3h N) | 9.53886 | 10.40092 |
| 30h (24h N + 6h A) | 9.65050 | 10.02586 |
| 30h (24h A + 6h N) | 9.53817 | 10.73019 |
| Aerobic grown coleoptiles (4 days) | 6.36295 | 8.90496 |
| Anoxic grown coleoptiles (4 days) | 7.07417 | 9.66423 |
| 10-day old seedling | 8.98694 | 11.54526 |
| Leaf from 7-day seedling | 9.17382 | 11.77018 |
| Mature leaf | 10.15279 | 11.02518 |
| Young Leaf | 10.82807 | 11.47561 |
| Semi Apical Meristem | 9.76538 | 11.48680 |
| Root from 7-day old seedling | 8.67936 | 10.54491 |
| Root from 7-day Seedling | 9.65729 | 11.07048 |