ARC Centre of Excellence for Plant Energy Biology

MPIC — TOM9,TOM22 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT1G04070AT5G43970
Probe Set ID 265041_at249076_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 71 of 7373 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 7.722678.78553
flower, stage 9 7.682288.78786
flower, stage 10/11 7.389448.38611
flower, stage 12 7.201898.68872
flower, stage 12, sepals 6.781718.76822
flower, stage 12, petals 6.575809.00095
flower, stage 12, stamens 6.872398.51952
flower, stage 12, carpels 7.595478.59086
flower, stage 15 6.641218.11989
flower, stage 15, pedicels 6.321259.11840
flower, stage 15, sepals 7.377388.25193
flower, stage 15, petals 7.160648.37199
flower, stage 15, stamen 7.010167.93505
flower, stage 15, carpels 7.340118.86299
mature pollen 7.499127.85218
cotyledon 6.415408.54757
silique, with seeds stage 3; mid globular to early heart embryo 7.293788.78414
silique, wth seeds stage 4; early to late heart embryo 7.834188.46543
silique, with seeds stage 5; late heart to mid torpedo embryo 7.801068.87175
seed, stage 6; mid to late torpedo embryos 8.204089.44050
seed, stage 7; late torpedo to early walking-stick embryo 8.252099.44039
seed, stage 8; walking-stick to early curled-cotyledons embryo 9.2273010.10700
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 9.3944910.36180
seed, stage 10; green-cotyledons embryo 9.5999210.32470
Germination - Harvested seed, collected before dessication 8.3141511.55180
Germination - 0 h dry seed, 15d after collection 8.3020711.38160
Germination - 1 h strat 8.7144311.27210
Germination - 12 h strat 10.2164011.19910
Germination - 48 h strat 9.9543612.31390
Germination - 1 h SL 9.9070012.41330
Germination - 6 h SL 9.5163912.56030
Germination - 12 h SL 8.6548212.10390
Germination - 24 h SL 7.8459011.60060
Germination - 48 h SL 6.5892911.09440
hypocotyl 6.822769.10489
seedling, green parts 6.220299.12690
seedling, green parts 6.534588.41140
seedling, green parts 6.352148.76050
seedling, green parts 6.509528.19400
seedling, green parts 6.130008.11253
shoot apex, vegetative + young leaves 7.139329.72245
leaves 1 + 2 6.324509.56420
shoot apex, vegetative 7.932489.79822
shoot apex, transition (before bolting) 8.023059.37569
shoot apex, inflorescence (after bolting) 8.183979.15754
rosette leaf #4, 1 cm long 6.687609.86596
rosette leaf # 2 6.838348.48406
rosette leaf # 4 6.510968.37302
rosette leaf # 6 6.207508.50557
rosette leaf # 8 6.576118.98453
rosette leaf # 10 6.565789.26961
rosette leaf # 12 6.872009.51669
leaf 7, petiole 6.441229.31642
leaf 7, proximal half 6.486839.03787
leaf 7, distal half 6.769558.59637
developmental drift, entire rosette after transition to flowering, but before bolting 6.358789.10583
developmental drift, entire rosette after transition to flowering, but before bolting 6.527018.99554
developmental drift, entire rosette after transition to flowering, but before bolting 6.469598.96254
senescing leaf 7.252047.81213
cauline leaf 6.576967.59288
vegetative rosette 7.238389.35435
vegetative rosette 6.671709.43270
vegetative rosette 6.919069.72808
leaf 6.389128.91848
stem, 2nd internode 6.481048.47399
stem, 1st node 6.589978.61428
root 7.678509.41742
root 6.984658.97489
root 7.278339.33933
root 7.857609.76882
roots 7.476069.74938
root 7.009048.79631
root 6.994188.87391
Rice RNA Transcript Expression  
Locus LOC_Os02g29400.1
Probe Set ID Os.6440.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 10.76920
Inflorescence (P2, 3-5 cm) 11.17208
Inflorescence (P3, 5-10 cm) 10.94573
Inflorescence (P4, 10-15 cm) 10.58639
Inflorescence (P5, 15-22 cm) 10.58936
Inflorescence (P6, 22-30 cm) 10.72688
Unpollenated stigma at antithesis 11.10473
Ovary at antithesis 11.56421
Embryo. 12.73368
Endosperm. 11.72111
Seed (S1, 0-2 days after pollenation) 9.22200
Seed (S2, 3-4 days after pollenation) 8.97068
Seed (S3, 5-10 days after pollenation) 8.71999
Seed (S4, 11-20 days after pollenation) 9.02748
Seed (S5, 21-29 days after pollenation) 9.43396
Dry seed 11.04537
1h seed (aerobic) 11.14008
1h seed (anaerobic) 11.17858
3h seed (aerobic) 10.93263
3h seed (anaerobic) 10.90129
12h seed (aerobic) 10.94779
12h seed (anaerobic) 10.65157
24h (aerobic) 10.90174
24h seed (anaerobic) 10.76786
27h (aerobic) 11.00536
27h (anaerobic) 10.98594
30h (aerobic) 11.07575
30h (anaerobic) 10.93903
27h (24h N + 3h A) 11.38522
27h (24h A + 3h N) 10.49440
30h (24h N + 6h A) 11.21029
30h (24h A + 6h N) 10.60736
Aerobic grown coleoptiles (4 days) 8.46087
Anoxic grown coleoptiles (4 days) 8.28060
10-day old seedling 10.46465
Leaf from 7-day seedling 10.75993
Mature leaf 9.81938
Young Leaf 9.20601
Semi Apical Meristem 11.62998
Root from 7-day old seedling 11.19936
Root from 7-day Seedling 12.01112