ARC Centre of Excellence for Plant Energy Biology

MPIC — TOM7 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT5G41685AT1G64220
Probe Set ID 249268_at262336_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootGermination, Seedling, Leaf, Flower, Root
No. of tissues expressed in 72 of 7327 of 73
Stress expression Control, Drought, Salt, Cold, HeatN/A
flower 2 9.952205.19931
flower, stage 9 9.663684.83368
flower, stage 10/11 9.188884.92405
flower, stage 12 9.681004.41887
flower, stage 12, sepals 9.231465.23131
flower, stage 12, petals 9.762054.62239
flower, stage 12, stamens 9.642434.77519
flower, stage 12, carpels 10.092804.68952
flower, stage 15 9.327434.15177
flower, stage 15, pedicels 9.607484.91834
flower, stage 15, sepals 9.183834.94136
flower, stage 15, petals 9.265304.79549
flower, stage 15, stamen 9.167115.26419
flower, stage 15, carpels 9.970164.44643
mature pollen 9.196087.30857
cotyledon 9.164935.22256
silique, with seeds stage 3; mid globular to early heart embryo 10.127804.60614
silique, wth seeds stage 4; early to late heart embryo 9.834783.94271
silique, with seeds stage 5; late heart to mid torpedo embryo 10.080504.18342
seed, stage 6; mid to late torpedo embryos 10.595204.53720
seed, stage 7; late torpedo to early walking-stick embryo 10.475604.42087
seed, stage 8; walking-stick to early curled-cotyledons embryo 10.395505.45524
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 10.591306.18661
seed, stage 10; green-cotyledons embryo 10.636406.10582
Germination - Harvested seed, collected before dessication 11.483606.90391
Germination - 0 h dry seed, 15d after collection 11.457206.92742
Germination - 1 h strat 11.322606.69317
Germination - 12 h strat 11.509408.68886
Germination - 48 h strat 11.7923011.04930
Germination - 1 h SL 11.8314010.88790
Germination - 6 h SL 12.5017010.85020
Germination - 12 h SL 12.097209.55830
Germination - 24 h SL 11.669408.63099
Germination - 48 h SL 11.112506.75503
hypocotyl 9.627285.37413
seedling, green parts 8.931545.18257
seedling, green parts 9.071974.67019
seedling, green parts 9.294854.84370
seedling, green parts 9.068705.32393
seedling, green parts 8.997054.51092
shoot apex, vegetative + young leaves 10.074805.79539
leaves 1 + 2 9.591645.53008
shoot apex, vegetative 10.338605.94718
shoot apex, transition (before bolting) 10.306105.61219
shoot apex, inflorescence (after bolting) 9.981935.33951
rosette leaf #4, 1 cm long 9.847536.42552
rosette leaf # 2 9.360385.40717
rosette leaf # 4 9.215685.16166
rosette leaf # 6 9.283765.67681
rosette leaf # 8 9.506795.56746
rosette leaf # 10 9.518725.75377
rosette leaf # 12 9.726906.03195
leaf 7, petiole 9.484585.36272
leaf 7, proximal half 9.516925.25988
leaf 7, distal half 9.344585.45913
developmental drift, entire rosette after transition to flowering, but before bolting 9.629555.18433
developmental drift, entire rosette after transition to flowering, but before bolting 9.659355.04620
developmental drift, entire rosette after transition to flowering, but before bolting 9.689245.12806
senescing leaf 9.196924.05734
cauline leaf 9.070544.38603
vegetative rosette 9.535615.13150
vegetative rosette 9.475215.16260
vegetative rosette 9.717215.51702
leaf 9.573934.65891
stem, 2nd internode 9.567234.63806
stem, 1st node 9.232704.50057
root 9.766116.45428
root 9.205735.18341
root 9.385176.05967
root 10.020307.49048
roots 9.961977.54854
root 9.502215.74103
root 9.490935.26141
Rice RNA Transcript Expression  
Locus LOC_Os05g50654.1
Probe Set ID Os.6720.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 40 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 7.69822
Inflorescence (P2, 3-5 cm) 7.76442
Inflorescence (P3, 5-10 cm) 7.79448
Inflorescence (P4, 10-15 cm) 7.77039
Inflorescence (P5, 15-22 cm) 7.82856
Inflorescence (P6, 22-30 cm) 6.48235
Unpollenated stigma at antithesis 8.65177
Ovary at antithesis 8.71888
Embryo. 8.25490
Endosperm. 11.45706
Seed (S1, 0-2 days after pollenation) 6.84255
Seed (S2, 3-4 days after pollenation) 7.29323
Seed (S3, 5-10 days after pollenation) 8.06059
Seed (S4, 11-20 days after pollenation) 8.09155
Seed (S5, 21-29 days after pollenation) 7.54710
Dry seed 7.92967
1h seed (aerobic) 8.01200
1h seed (anaerobic) 8.31334
3h seed (aerobic) 7.40123
3h seed (anaerobic) 7.81256
12h seed (aerobic) 8.40075
12h seed (anaerobic) 7.88929
24h (aerobic) 7.78974
24h seed (anaerobic) 7.26950
27h (aerobic) 7.58473
27h (anaerobic) 7.32986
30h (aerobic) 7.50954
30h (anaerobic) 7.24068
27h (24h N + 3h A) 9.09704
27h (24h A + 3h N) 5.84170
30h (24h N + 6h A) 8.22857
30h (24h A + 6h N) 6.15111
Aerobic grown coleoptiles (4 days) 4.82002
Anoxic grown coleoptiles (4 days) 4.85201
10-day old seedling 6.01873
Leaf from 7-day seedling 6.19984
Mature leaf 6.08157
Young Leaf 6.10107
Semi Apical Meristem 8.30470
Root from 7-day old seedling 6.79128
Root from 7-day Seedling 8.43702