ARC Centre of Excellence for Plant Energy Biology

MPIC — TOM40 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT3G20000AT1G50400
Probe Set ID 256628_at262459_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Flower, Root
No. of tissues expressed in 73 of 7357 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 10.281804.35134
flower, stage 9 10.466505.03203
flower, stage 10/11 10.288204.43627
flower, stage 12 10.218903.65971
flower, stage 12, sepals 9.785714.35739
flower, stage 12, petals 10.305504.34344
flower, stage 12, stamens 9.258284.22092
flower, stage 12, carpels 10.498404.05537
flower, stage 15 9.596033.92808
flower, stage 15, pedicels 9.947113.93542
flower, stage 15, sepals 9.188144.55766
flower, stage 15, petals 8.783734.35360
flower, stage 15, stamen 8.390963.94729
flower, stage 15, carpels 10.632503.82919
mature pollen 9.229835.69684
cotyledon 9.050674.82738
silique, with seeds stage 3; mid globular to early heart embryo 9.619703.71215
silique, wth seeds stage 4; early to late heart embryo 9.249313.62260
silique, with seeds stage 5; late heart to mid torpedo embryo 9.171303.32642
seed, stage 6; mid to late torpedo embryos 9.404643.91630
seed, stage 7; late torpedo to early walking-stick embryo 9.242583.72413
seed, stage 8; walking-stick to early curled-cotyledons embryo 9.535684.69142
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 9.311644.98935
seed, stage 10; green-cotyledons embryo 9.570375.47123
Germination - Harvested seed, collected before dessication 11.537008.24713
Germination - 0 h dry seed, 15d after collection 11.717708.49316
Germination - 1 h strat 11.804808.21218
Germination - 12 h strat 11.969208.69078
Germination - 48 h strat 12.827209.73016
Germination - 1 h SL 12.995509.31619
Germination - 6 h SL 13.141909.54265
Germination - 12 h SL 12.797008.19437
Germination - 24 h SL 12.382006.96930
Germination - 48 h SL 11.544904.88970
hypocotyl 10.071204.08252
seedling, green parts 10.551704.20364
seedling, green parts 9.362334.23934
seedling, green parts 9.502054.43856
seedling, green parts 9.307774.65633
seedling, green parts 9.258154.13183
shoot apex, vegetative + young leaves 10.907304.23276
leaves 1 + 2 10.072404.84506
shoot apex, vegetative 11.120404.20137
shoot apex, transition (before bolting) 10.955004.31538
shoot apex, inflorescence (after bolting) 10.935904.31132
rosette leaf #4, 1 cm long 10.500704.49484
rosette leaf # 2 9.081534.18348
rosette leaf # 4 9.175974.38554
rosette leaf # 6 9.341244.54249
rosette leaf # 8 9.573013.90445
rosette leaf # 10 9.897164.09482
rosette leaf # 12 10.143004.34277
leaf 7, petiole 9.672063.85454
leaf 7, proximal half 9.331234.17261
leaf 7, distal half 9.065074.15454
developmental drift, entire rosette after transition to flowering, but before bolting 9.693833.99304
developmental drift, entire rosette after transition to flowering, but before bolting 9.797863.95629
developmental drift, entire rosette after transition to flowering, but before bolting 9.787863.78137
senescing leaf 8.898934.87172
cauline leaf 8.582534.08284
vegetative rosette 10.257304.40578
vegetative rosette 10.617804.03360
vegetative rosette 10.853804.36896
leaf 9.567234.35230
stem, 2nd internode 8.610693.80755
stem, 1st node 9.242683.68051
root 10.535604.02687
root 10.278304.98519
root 10.149904.58524
root 11.008804.38541
roots 10.983304.08625
root 9.650475.28735
root 9.658224.52972
Rice RNA Transcript Expression  
Locus LOC_Os01g16910.1LOC_Os03g20750.1
Probe Set ID Os.43682.1.S1_atOs.5126.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 4141 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 7.4132510.15958
Inflorescence (P2, 3-5 cm) 6.4272510.40996
Inflorescence (P3, 5-10 cm) 6.5738910.10501
Inflorescence (P4, 10-15 cm) 7.151819.84498
Inflorescence (P5, 15-22 cm) 7.169099.87919
Inflorescence (P6, 22-30 cm) 6.543719.45024
Unpollenated stigma at antithesis 8.931829.80329
Ovary at antithesis 8.9628810.56525
Embryo. 8.8747610.61197
Endosperm. 7.803489.60464
Seed (S1, 0-2 days after pollenation) 6.364828.23088
Seed (S2, 3-4 days after pollenation) 5.622168.31754
Seed (S3, 5-10 days after pollenation) 5.252557.94428
Seed (S4, 11-20 days after pollenation) 5.122867.83082
Seed (S5, 21-29 days after pollenation) 6.572398.34633
Dry seed 8.557739.62646
1h seed (aerobic) 8.532049.56835
1h seed (anaerobic) 8.737939.59506
3h seed (aerobic) 8.347599.27195
3h seed (anaerobic) 8.489359.33629
12h seed (aerobic) 9.255289.73924
12h seed (anaerobic) 8.923509.59595
24h (aerobic) 9.287229.78555
24h seed (anaerobic) 8.770469.73902
27h (aerobic) 9.796869.78682
27h (anaerobic) 9.137929.78179
30h (aerobic) 9.704619.81982
30h (anaerobic) 9.258099.83542
27h (24h N + 3h A) 10.054199.87345
27h (24h A + 3h N) 9.243169.70979
30h (24h N + 6h A) 9.915009.85048
30h (24h A + 6h N) 8.986199.63310
Aerobic grown coleoptiles (4 days) 5.428977.44444
Anoxic grown coleoptiles (4 days) 5.902388.18509
10-day old seedling 4.4579210.21589
Leaf from 7-day seedling 5.4911710.43096
Mature leaf 4.377669.35885
Young Leaf 4.535199.78806
Semi Apical Meristem 8.7668110.04844
Root from 7-day old seedling 7.820019.62742
Root from 7-day Seedling 7.6485710.23583