ARC Centre of Excellence for Plant Energy Biology

MPIC — TOM20 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT3G27070AT1G27390AT3G27080AT5G40930
Probe Set ID 257810_at264490_at257792_at249322_at
Developmental Expression Stem, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 5 of 7372 of 7373 of 7373 of 73
Stress expression N/AControl, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 3.386508.379649.287528.99480
flower, stage 9 3.571798.697869.041909.09542
flower, stage 10/11 3.388338.343318.783048.87241
flower, stage 12 3.551408.461549.088109.17815
flower, stage 12, sepals 3.913438.073878.650949.71222
flower, stage 12, petals 4.083968.390998.976029.20180
flower, stage 12, stamens 4.125968.148709.110069.94906
flower, stage 12, carpels 3.544308.893729.433609.17788
flower, stage 15 3.504607.978868.592679.24466
flower, stage 15, pedicels 4.213498.014129.306999.14803
flower, stage 15, sepals 3.933618.025138.3542410.31210
flower, stage 15, petals 4.246847.819338.294309.69903
flower, stage 15, stamen 4.229287.369738.170819.71276
flower, stage 15, carpels 3.492278.981719.402199.34967
mature pollen 6.360567.473368.5078710.51190
cotyledon 4.142017.514618.234379.02660
silique, with seeds stage 3; mid globular to early heart embryo 3.730447.637999.196469.24721
silique, wth seeds stage 4; early to late heart embryo 3.380747.833098.404269.28978
silique, with seeds stage 5; late heart to mid torpedo embryo 3.574238.003678.365899.22208
seed, stage 6; mid to late torpedo embryos 3.912807.998298.370469.32721
seed, stage 7; late torpedo to early walking-stick embryo 4.166228.068688.218009.67891
seed, stage 8; walking-stick to early curled-cotyledons embryo 4.889118.294208.380889.89464
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 5.353978.478588.3397610.05220
seed, stage 10; green-cotyledons embryo 5.256008.679878.5390110.00140
Germination - Harvested seed, collected before dessication 6.6520010.2892011.7047012.71110
Germination - 0 h dry seed, 15d after collection 6.1531210.3333011.7736012.66810
Germination - 1 h strat 5.8105010.4321011.2013012.44530
Germination - 12 h strat 5.7149910.6176011.0906012.57080
Germination - 48 h strat 5.4265511.5051012.2817012.87510
Germination - 1 h SL 5.3920511.6029012.3055012.69900
Germination - 6 h SL 5.2630610.9690012.2369011.72570
Germination - 12 h SL 5.0982310.8416012.1653011.35560
Germination - 24 h SL 4.888619.7454412.0810010.39600
Germination - 48 h SL 4.903468.6666111.373909.86392
hypocotyl 4.311858.131298.846768.28881
seedling, green parts 3.931738.365278.855198.57719
seedling, green parts 3.929717.506048.034888.39829
seedling, green parts 4.014837.720918.418238.46187
seedling, green parts 3.923747.375427.993548.51639
seedling, green parts 4.107327.405198.038178.53920
shoot apex, vegetative + young leaves 3.926318.928959.366058.89355
leaves 1 + 2 4.575897.995598.855858.92502
shoot apex, vegetative 3.769509.280319.709978.88423
shoot apex, transition (before bolting) 3.655549.264989.768659.02602
shoot apex, inflorescence (after bolting) 3.670409.064639.339468.98038
rosette leaf #4, 1 cm long 4.486278.715279.471259.04772
rosette leaf # 2 3.992667.786258.296839.20895
rosette leaf # 4 4.007897.752708.123538.88116
rosette leaf # 6 4.190487.871568.245848.80582
rosette leaf # 8 4.389647.979958.527438.66843
rosette leaf # 10 4.304078.272648.866918.74890
rosette leaf # 12 4.312668.059859.248018.67195
leaf 7, petiole 4.105497.862748.810218.71111
leaf 7, proximal half 4.380787.819538.702758.71705
leaf 7, distal half 4.319567.644648.296598.81712
developmental drift, entire rosette after transition to flowering, but before bolting 4.070757.965708.596578.66544
developmental drift, entire rosette after transition to flowering, but before bolting 4.084818.134698.989948.91512
developmental drift, entire rosette after transition to flowering, but before bolting 4.098788.146758.981938.94098
senescing leaf 3.889547.921018.411389.44996
cauline leaf 4.026177.457068.509429.37983
vegetative rosette 3.972318.176098.838618.71079
vegetative rosette 3.983328.392678.855478.83300
vegetative rosette 4.077608.682609.138738.95785
leaf 4.130477.619938.729428.74436
stem, 2nd internode 5.332817.377388.633469.19467
stem, 1st node 4.891837.537658.734648.61832
root 4.679708.057979.465939.08046
root 4.554598.018658.807248.47516
root 4.731668.018319.075078.84748
root 6.119448.790859.810708.69590
roots 6.434838.590189.688848.56803
root 5.140617.686178.381608.54951
root 4.842667.767548.517918.83892
Rice RNA Transcript Expression  
Locus LOC_Os01g69250.1
Probe Set ID Os.12984.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 12.08759
Inflorescence (P2, 3-5 cm) 12.53876
Inflorescence (P3, 5-10 cm) 12.09432
Inflorescence (P4, 10-15 cm) 11.90519
Inflorescence (P5, 15-22 cm) 12.00568
Inflorescence (P6, 22-30 cm) 11.92857
Unpollenated stigma at antithesis 12.08626
Ovary at antithesis 12.68911
Embryo. 12.55457
Endosperm. 12.50384
Seed (S1, 0-2 days after pollenation) 10.77706
Seed (S2, 3-4 days after pollenation) 10.52232
Seed (S3, 5-10 days after pollenation) 9.73015
Seed (S4, 11-20 days after pollenation) 9.98249
Seed (S5, 21-29 days after pollenation) 10.86640
Dry seed 11.73820
1h seed (aerobic) 11.78476
1h seed (anaerobic) 11.72398
3h seed (aerobic) 11.57380
3h seed (anaerobic) 11.51511
12h seed (aerobic) 11.71438
12h seed (anaerobic) 11.85572
24h (aerobic) 11.98910
24h seed (anaerobic) 11.92703
27h (aerobic) 11.92290
27h (anaerobic) 12.00188
30h (aerobic) 11.94229
30h (anaerobic) 12.03826
27h (24h N + 3h A) 11.85976
27h (24h A + 3h N) 12.05989
30h (24h N + 6h A) 11.93072
30h (24h A + 6h N) 12.04687
Aerobic grown coleoptiles (4 days) 8.45459
Anoxic grown coleoptiles (4 days) 10.15021
10-day old seedling 11.45835
Leaf from 7-day seedling 11.59569
Mature leaf 11.29469
Young Leaf 12.11854
Semi Apical Meristem 11.92875
Root from 7-day old seedling 11.61310
Root from 7-day Seedling 12.08302