MPIC — TIM8 RNA Expression
RNA transcript expression levels are shown for Arabidopsis and rice,
representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm)
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2
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7
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12
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Global expression heatmaps (Excel): Arabidopsis Rice
|
| Arabidopsis RNA Transcript Expression |
|
| Locus |
AT5G50810 |
| Probe Set ID |
248473_at |
| Developmental Expression |
Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in |
72 of 73 |
| Stress expression |
Control, Drought, Salt, Cold, Heat |
| flower 2 |
10.44860 |
| flower, stage 9 |
10.78970 |
| flower, stage 10/11 |
10.25180 |
| flower, stage 12 |
10.11950 |
| flower, stage 12, sepals |
8.97595 |
| flower, stage 12, petals |
9.87098 |
| flower, stage 12, stamens |
8.92582 |
| flower, stage 12, carpels |
10.83630 |
| flower, stage 15 |
9.37231 |
| flower, stage 15, pedicels |
9.32046 |
| flower, stage 15, sepals |
8.22163 |
| flower, stage 15, petals |
8.09235 |
| flower, stage 15, stamen |
7.67234 |
| flower, stage 15, carpels |
10.33470 |
| mature pollen |
8.21279 |
| cotyledon |
8.60056 |
| silique, with seeds stage 3; mid globular to early heart embryo |
9.87671 |
| silique, wth seeds stage 4; early to late heart embryo |
9.26499 |
| silique, with seeds stage 5; late heart to mid torpedo embryo |
9.28043 |
| seed, stage 6; mid to late torpedo embryos |
9.78031 |
| seed, stage 7; late torpedo to early walking-stick embryo |
9.77403 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo |
10.00180 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo |
9.94715 |
| seed, stage 10; green-cotyledons embryo |
9.92779 |
| Germination - Harvested seed, collected before dessication |
11.81210 |
| Germination - 0 h dry seed, 15d after collection |
11.76290 |
| Germination - 1 h strat |
11.54750 |
| Germination - 12 h strat |
11.62270 |
| Germination - 48 h strat |
13.09720 |
| Germination - 1 h SL |
13.24870 |
| Germination - 6 h SL |
13.86290 |
| Germination - 12 h SL |
13.38990 |
| Germination - 24 h SL |
12.76530 |
| Germination - 48 h SL |
11.94430 |
| hypocotyl |
10.12590 |
| seedling, green parts |
9.24520 |
| seedling, green parts |
8.93309 |
| seedling, green parts |
9.37039 |
| seedling, green parts |
9.01562 |
| seedling, green parts |
8.83260 |
| shoot apex, vegetative + young leaves |
10.79980 |
| leaves 1 + 2 |
9.84856 |
| shoot apex, vegetative |
11.19710 |
| shoot apex, transition (before bolting) |
11.16270 |
| shoot apex, inflorescence (after bolting) |
11.32370 |
| rosette leaf #4, 1 cm long |
10.31180 |
| rosette leaf # 2 |
8.56076 |
| rosette leaf # 4 |
8.86275 |
| rosette leaf # 6 |
8.89399 |
| rosette leaf # 8 |
9.26733 |
| rosette leaf # 10 |
9.59436 |
| rosette leaf # 12 |
9.97631 |
| leaf 7, petiole |
9.27345 |
| leaf 7, proximal half |
8.78779 |
| leaf 7, distal half |
8.55110 |
| developmental drift, entire rosette after transition to flowering, but before bolting |
9.36694 |
| developmental drift, entire rosette after transition to flowering, but before bolting |
9.34558 |
| developmental drift, entire rosette after transition to flowering, but before bolting |
9.41663 |
| senescing leaf |
7.86904 |
| cauline leaf |
7.91402 |
| vegetative rosette |
9.94301 |
| vegetative rosette |
10.17930 |
| vegetative rosette |
10.56990 |
| leaf |
9.09384 |
| stem, 2nd internode |
8.45413 |
| stem, 1st node |
9.19964 |
| root |
10.09830 |
| root |
9.53013 |
| root |
9.97313 |
| root |
10.89250 |
| roots |
10.70800 |
| root |
9.41239 |
| root |
9.48905 |
| Rice RNA Transcript Expression |
|
| Locus |
LOC_Os08g42380.1 |
| Probe Set ID |
Os.13952.1.S1_at |
| Developmental Expression |
Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower |
| No. of tissues expressed in |
41 of 41 |
| Stress expression |
Control (D,S,C), Salt, Heat |
| Young inflorescence (P1, upto 3 cm) |
7.83913 |
| Inflorescence (P2, 3-5 cm) |
8.83621 |
| Inflorescence (P3, 5-10 cm) |
8.21821 |
| Inflorescence (P4, 10-15 cm) |
7.80011 |
| Inflorescence (P5, 15-22 cm) |
8.16961 |
| Inflorescence (P6, 22-30 cm) |
8.51241 |
| Unpollenated stigma at antithesis |
8.55528 |
| Ovary at antithesis |
8.21531 |
| Embryo. |
11.46819 |
| Endosperm. |
11.36196 |
| Seed (S1, 0-2 days after pollenation) |
6.26883 |
| Seed (S2, 3-4 days after pollenation) |
7.35405 |
| Seed (S3, 5-10 days after pollenation) |
6.63298 |
| Seed (S4, 11-20 days after pollenation) |
6.24374 |
| Seed (S5, 21-29 days after pollenation) |
6.28668 |
| Dry seed |
8.45050 |
| 1h seed (aerobic) |
8.54768 |
| 1h seed (anaerobic) |
8.69117 |
| 3h seed (aerobic) |
8.42301 |
| 3h seed (anaerobic) |
8.51031 |
| 12h seed (aerobic) |
9.25381 |
| 12h seed (anaerobic) |
9.09079 |
| 24h (aerobic) |
9.12214 |
| 24h seed (anaerobic) |
8.87706 |
| 27h (aerobic) |
9.51684 |
| 27h (anaerobic) |
9.40668 |
| 30h (aerobic) |
9.41472 |
| 30h (anaerobic) |
9.36360 |
| 27h (24h N + 3h A) |
9.97535 |
| 27h (24h A + 3h N) |
9.02682 |
| 30h (24h N + 6h A) |
9.78081 |
| 30h (24h A + 6h N) |
9.05743 |
| Aerobic grown coleoptiles (4 days) |
5.63877 |
| Anoxic grown coleoptiles (4 days) |
5.85495 |
| 10-day old seedling |
8.15554 |
| Leaf from 7-day seedling |
8.53612 |
| Mature leaf |
7.66019 |
| Young Leaf |
7.76355 |
| Semi Apical Meristem |
9.06438 |
| Root from 7-day old seedling |
9.22375 |
| Root from 7-day Seedling |
10.90202 |
