MPIC
RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm) | 2 | 7 | 12 | Global expression heatmaps (Excel): Arabidopsis Rice |
| Arabidopsis RNA Transcript Expression | |
|---|---|
| Locus | AT1G55900 |
| Probe Set ID | 260596_at |
| Developmental Expression | Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in | 72 of 73 |
| Stress expression | Control, Drought, Salt, Cold, Heat |
| flower 2 | 8.86492 |
| flower, stage 9 | 9.16873 |
| flower, stage 10/11 | 8.71047 |
| flower, stage 12 | 8.72805 |
| flower, stage 12, sepals | 8.52124 |
| flower, stage 12, petals | 8.84430 |
| flower, stage 12, stamens | 8.01340 |
| flower, stage 12, carpels | 9.22209 |
| flower, stage 15 | 8.06080 |
| flower, stage 15, pedicels | 8.16036 |
| flower, stage 15, sepals | 8.16940 |
| flower, stage 15, petals | 7.60831 |
| flower, stage 15, stamen | 7.10238 |
| flower, stage 15, carpels | 8.92802 |
| mature pollen | 5.84826 |
| cotyledon | 7.53535 |
| silique, with seeds stage 3; mid globular to early heart embryo | 7.85790 |
| silique, wth seeds stage 4; early to late heart embryo | 8.32857 |
| silique, with seeds stage 5; late heart to mid torpedo embryo | 8.13251 |
| seed, stage 6; mid to late torpedo embryos | 8.39394 |
| seed, stage 7; late torpedo to early walking-stick embryo | 8.31744 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo | 8.68217 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo | 8.41442 |
| seed, stage 10; green-cotyledons embryo | 8.79474 |
| Germination - Harvested seed, collected before dessication | 9.81435 |
| Germination - 0 h dry seed, 15d after collection | 9.99522 |
| Germination - 1 h strat | 10.21830 |
| Germination - 12 h strat | 10.76160 |
| Germination - 48 h strat | 12.18820 |
| Germination - 1 h SL | 12.24660 |
| Germination - 6 h SL | 11.71830 |
| Germination - 12 h SL | 11.19980 |
| Germination - 24 h SL | 11.08960 |
| Germination - 48 h SL | 10.25190 |
| hypocotyl | 8.36419 |
| seedling, green parts | 8.78366 |
| seedling, green parts | 7.55162 |
| seedling, green parts | 7.74635 |
| seedling, green parts | 7.47901 |
| seedling, green parts | 7.27051 |
| shoot apex, vegetative + young leaves | 8.88233 |
| leaves 1 + 2 | 8.02277 |
| shoot apex, vegetative | 9.45216 |
| shoot apex, transition (before bolting) | 9.35400 |
| shoot apex, inflorescence (after bolting) | 9.49570 |
| rosette leaf #4, 1 cm long | 8.75465 |
| rosette leaf # 2 | 7.70056 |
| rosette leaf # 4 | 7.69801 |
| rosette leaf # 6 | 7.78855 |
| rosette leaf # 8 | 7.89058 |
| rosette leaf # 10 | 8.13861 |
| rosette leaf # 12 | 8.39878 |
| leaf 7, petiole | 7.93984 |
| leaf 7, proximal half | 7.67073 |
| leaf 7, distal half | 7.62485 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 7.90210 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 7.92579 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 8.04101 |
| senescing leaf | 7.65862 |
| cauline leaf | 7.22603 |
| vegetative rosette | 8.44229 |
| vegetative rosette | 8.63756 |
| vegetative rosette | 8.85442 |
| leaf | 7.81232 |
| stem, 2nd internode | 7.03176 |
| stem, 1st node | 7.64925 |
| root | 8.63991 |
| root | 8.36363 |
| root | 8.49357 |
| root | 9.18755 |
| roots | 8.63535 |
| root | 7.90721 |
| root | 7.99947 |
| Rice RNA Transcript Expression | ||
|---|---|---|
| Locus | LOC_Os01g55700.1 | LOC_Os05g43770.1 |
| Probe Set ID | Os.25428.1.S1_at | Os.18433.1.S1_s_at |
| Developmental Expression | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower |
| No. of tissues expressed in | 36 of 41 | 41 of 41 |
| Stress expression | Control (D,S,C), Control (H), Heat | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat |
| Young inflorescence (P1, upto 3 cm) | 3.02547 | 9.73550 |
| Inflorescence (P2, 3-5 cm) | 3.87962 | 9.75945 |
| Inflorescence (P3, 5-10 cm) | 2.96508 | 9.32172 |
| Inflorescence (P4, 10-15 cm) | 3.05260 | 8.79108 |
| Inflorescence (P5, 15-22 cm) | 2.90598 | 7.97113 |
| Inflorescence (P6, 22-30 cm) | 3.31912 | 7.67828 |
| Unpollenated stigma at antithesis | 7.58283 | 7.51650 |
| Ovary at antithesis | 8.66714 | 10.60828 |
| Embryo. | 7.88196 | 9.91476 |
| Endosperm. | 4.57163 | 8.71557 |
| Seed (S1, 0-2 days after pollenation) | 2.65949 | 7.14557 |
| Seed (S2, 3-4 days after pollenation) | 3.03056 | 7.98219 |
| Seed (S3, 5-10 days after pollenation) | 3.44454 | 7.04303 |
| Seed (S4, 11-20 days after pollenation) | 2.90055 | 7.21031 |
| Seed (S5, 21-29 days after pollenation) | 3.23434 | 8.46413 |
| Dry seed | 8.00772 | 10.78597 |
| 1h seed (aerobic) | 7.74772 | 10.81578 |
| 1h seed (anaerobic) | 7.79265 | 10.80791 |
| 3h seed (aerobic) | 7.36406 | 10.32462 |
| 3h seed (anaerobic) | 7.38543 | 10.52696 |
| 12h seed (aerobic) | 8.64919 | 9.70255 |
| 12h seed (anaerobic) | 8.73948 | 10.33956 |
| 24h (aerobic) | 8.74979 | 9.61022 |
| 24h seed (anaerobic) | 8.24258 | 10.36412 |
| 27h (aerobic) | 8.80083 | 9.90163 |
| 27h (anaerobic) | 8.46155 | 10.59079 |
| 30h (aerobic) | 8.73907 | 9.98134 |
| 30h (anaerobic) | 8.43308 | 10.58885 |
| 27h (24h N + 3h A) | 9.06249 | 10.15460 |
| 27h (24h A + 3h N) | 8.63273 | 10.44245 |
| 30h (24h N + 6h A) | 8.90501 | 10.10716 |
| 30h (24h A + 6h N) | 8.62453 | 10.51756 |
| Aerobic grown coleoptiles (4 days) | 5.39228 | 6.04036 |
| Anoxic grown coleoptiles (4 days) | 6.52404 | 8.68787 |
| 10-day old seedling | 7.33296 | 8.57227 |
| Leaf from 7-day seedling | 7.49467 | 7.71859 |
| Mature leaf | 3.31755 | 6.56418 |
| Young Leaf | 3.08949 | 7.75013 |
| Semi Apical Meristem | 3.07686 | 10.38857 |
| Root from 7-day old seedling | 2.99289 | 7.97385 |
| Root from 7-day Seedling | 8.09447 | 8.64968 |