ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM44 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT2G20510AT2G36070
Probe Set ID 263395_at263939_at
Developmental Expression Not expressedSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 0 of 7372 of 73
Stress expression N/AControl, Drought, Salt, Cold, Heat
flower 2 2.461648.33181
flower, stage 9 2.626248.20120
flower, stage 10/11 2.576487.99919
flower, stage 12 2.508798.06695
flower, stage 12, sepals 2.772418.25667
flower, stage 12, petals 2.805978.10960
flower, stage 12, stamens 2.989857.53978
flower, stage 12, carpels 2.493028.43491
flower, stage 15 2.490787.64481
flower, stage 15, pedicels 2.952887.89962
flower, stage 15, sepals 3.391348.10623
flower, stage 15, petals 2.955957.64531
flower, stage 15, stamen 3.118337.51773
flower, stage 15, carpels 2.583698.18633
mature pollen 5.099017.34683
cotyledon 3.106607.57084
silique, with seeds stage 3; mid globular to early heart embryo 2.586947.79168
silique, wth seeds stage 4; early to late heart embryo 2.429097.60799
silique, with seeds stage 5; late heart to mid torpedo embryo 2.528467.48895
seed, stage 6; mid to late torpedo embryos 2.824917.72430
seed, stage 7; late torpedo to early walking-stick embryo 3.035397.82262
seed, stage 8; walking-stick to early curled-cotyledons embryo 3.712307.98962
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 3.958398.45509
seed, stage 10; green-cotyledons embryo 4.110428.36035
Germination - Harvested seed, collected before dessication 5.647399.62889
Germination - 0 h dry seed, 15d after collection 5.7901810.00190
Germination - 1 h strat 5.6799310.09420
Germination - 12 h strat 5.5316010.65380
Germination - 48 h strat 5.2152212.17360
Germination - 1 h SL 5.2114012.22510
Germination - 6 h SL 5.0601011.55490
Germination - 12 h SL 4.9107510.88520
Germination - 24 h SL 4.6922610.46590
Germination - 48 h SL 4.655289.60260
hypocotyl 2.573387.90997
seedling, green parts 2.840148.66471
seedling, green parts 2.804257.39957
seedling, green parts 2.764767.57593
seedling, green parts 2.727277.26736
seedling, green parts 2.745497.43906
shoot apex, vegetative + young leaves 2.800578.55967
leaves 1 + 2 3.173647.94499
shoot apex, vegetative 2.672268.93978
shoot apex, transition (before bolting) 2.750798.81344
shoot apex, inflorescence (after bolting) 2.724768.60184
rosette leaf #4, 1 cm long 3.033858.71451
rosette leaf # 2 3.097067.68311
rosette leaf # 4 3.010877.71225
rosette leaf # 6 3.086977.67005
rosette leaf # 8 3.062237.71124
rosette leaf # 10 3.015977.93123
rosette leaf # 12 2.961998.03691
leaf 7, petiole 2.877718.02557
leaf 7, proximal half 3.149217.61308
leaf 7, distal half 3.051927.63211
developmental drift, entire rosette after transition to flowering, but before bolting 3.014257.79271
developmental drift, entire rosette after transition to flowering, but before bolting 2.900848.07495
developmental drift, entire rosette after transition to flowering, but before bolting 2.856747.98023
senescing leaf 2.649507.86309
cauline leaf 2.903227.58976
vegetative rosette 2.984298.10800
vegetative rosette 2.800678.34477
vegetative rosette 2.812008.60090
leaf 2.989637.74959
stem, 2nd internode 2.863957.19077
stem, 1st node 2.557067.30074
root 2.653628.20507
root 2.605787.89714
root 2.770347.97257
root 2.636098.49697
roots 3.072298.27583
root 2.646357.83457
root 2.644817.76996
Rice RNA Transcript Expression  
Locus LOC_Os07g22700.1
Probe Set ID Os.17328.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 7.12800
Inflorescence (P2, 3-5 cm) 7.34578
Inflorescence (P3, 5-10 cm) 6.98166
Inflorescence (P4, 10-15 cm) 6.63140
Inflorescence (P5, 15-22 cm) 6.57377
Inflorescence (P6, 22-30 cm) 6.82078
Unpollenated stigma at antithesis 7.63581
Ovary at antithesis 7.31310
Embryo. 4.90973
Endosperm. 6.91674
Seed (S1, 0-2 days after pollenation) 7.28338
Seed (S2, 3-4 days after pollenation) 6.70802
Seed (S3, 5-10 days after pollenation) 6.64333
Seed (S4, 11-20 days after pollenation) 5.38560
Seed (S5, 21-29 days after pollenation) 6.51117
Dry seed 4.94219
1h seed (aerobic) 4.99665
1h seed (anaerobic) 5.17525
3h seed (aerobic) 5.19854
3h seed (anaerobic) 4.94289
12h seed (aerobic) 5.74616
12h seed (anaerobic) 5.83480
24h (aerobic) 5.55579
24h seed (anaerobic) 5.28162
27h (aerobic) 6.25591
27h (anaerobic) 6.21187
30h (aerobic) 6.16620
30h (anaerobic) 6.04051
27h (24h N + 3h A) 6.35719
27h (24h A + 3h N) 6.24851
30h (24h N + 6h A) 6.04056
30h (24h A + 6h N) 6.17803
Aerobic grown coleoptiles (4 days) 5.20617
Anoxic grown coleoptiles (4 days) 5.13189
10-day old seedling 7.26265
Leaf from 7-day seedling 7.18263
Mature leaf 7.10533
Young Leaf 7.46697
Semi Apical Meristem 6.00703
Root from 7-day old seedling 6.79751
Root from 7-day Seedling 7.61068