ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM23 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT1G17530AT1G72750AT3G04800
Probe Set ID 260687_at259890_at259084_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootGermination
No. of tissues expressed in 73 of 7373 of 735 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, HeatN/A
flower 2 7.562028.746082.14641
flower, stage 9 7.935378.697403.17084
flower, stage 10/11 7.913948.578031.94189
flower, stage 12 7.759168.806052.03456
flower, stage 12, sepals 7.865979.497331.97933
flower, stage 12, petals 7.790799.080022.13521
flower, stage 12, stamens 8.618828.907862.37701
flower, stage 12, carpels 8.113168.722472.12860
flower, stage 15 7.962888.760411.98101
flower, stage 15, pedicels 7.148779.009782.09399
flower, stage 15, sepals 8.694959.492982.51774
flower, stage 15, petals 7.988369.101982.39041
flower, stage 15, stamen 7.924709.066762.31274
flower, stage 15, carpels 8.256118.719782.03415
mature pollen 10.147509.067333.40258
cotyledon 7.536839.356652.17189
silique, with seeds stage 3; mid globular to early heart embryo 7.345708.514861.90206
silique, wth seeds stage 4; early to late heart embryo 8.013738.563831.84972
silique, with seeds stage 5; late heart to mid torpedo embryo 8.252078.814141.82316
seed, stage 6; mid to late torpedo embryos 7.947418.758182.01719
seed, stage 7; late torpedo to early walking-stick embryo 7.964128.504522.05074
seed, stage 8; walking-stick to early curled-cotyledons embryo 9.339189.035682.60782
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 9.418998.607922.59344
seed, stage 10; green-cotyledons embryo 9.953699.282972.69123
Germination - Harvested seed, collected before dessication 13.6733010.425206.10236
Germination - 0 h dry seed, 15d after collection 13.5556010.349905.97068
Germination - 1 h strat 13.2913010.196505.70676
Germination - 12 h strat 13.2772012.071107.21981
Germination - 48 h strat 12.0458011.497609.17617
Germination - 1 h SL 11.8346011.675008.78004
Germination - 6 h SL 10.9142012.022107.84923
Germination - 12 h SL 9.9978511.580406.23740
Germination - 24 h SL 9.5036311.788405.14912
Germination - 48 h SL 8.8627310.782404.29638
hypocotyl 7.392589.150122.09186
seedling, green parts 7.066949.247452.04359
seedling, green parts 8.199489.786522.06065
seedling, green parts 7.749049.404291.95882
seedling, green parts 8.5444010.199802.14165
seedling, green parts 8.706149.645232.00719
shoot apex, vegetative + young leaves 7.631109.455302.05644
leaves 1 + 2 7.282219.387072.31409
shoot apex, vegetative 7.700589.606712.41513
shoot apex, transition (before bolting) 7.841629.524483.60343
shoot apex, inflorescence (after bolting) 7.938969.177693.86902
rosette leaf #4, 1 cm long 6.729179.426612.17268
rosette leaf # 2 8.007539.748932.06341
rosette leaf # 4 8.026379.670612.14559
rosette leaf # 6 7.828929.587542.20255
rosette leaf # 8 7.612789.564982.10333
rosette leaf # 10 7.393959.512202.03946
rosette leaf # 12 7.207949.337702.24600
leaf 7, petiole 7.307109.362942.08070
leaf 7, proximal half 7.622369.454262.22052
leaf 7, distal half 7.851489.607232.13487
developmental drift, entire rosette after transition to flowering, but before bolting 7.628039.153002.03590
developmental drift, entire rosette after transition to flowering, but before bolting 7.621709.147052.17548
developmental drift, entire rosette after transition to flowering, but before bolting 7.656199.058761.92350
senescing leaf 8.675409.145212.05732
cauline leaf 8.486688.908852.02285
vegetative rosette 7.168849.384732.10274
vegetative rosette 7.481089.081012.00886
vegetative rosette 7.718129.176262.03767
leaf 7.691889.233882.24702
stem, 2nd internode 8.649438.586682.19787
stem, 1st node 7.833458.521331.84412
root 7.975969.670662.27080
root 8.333699.618522.22940
root 7.823079.501072.33305
root 7.747729.717472.91500
roots 8.655329.850412.54927
root 8.820809.580032.10417
root 8.218669.346762.00059
Rice RNA Transcript Expression  
Locus LOC_Os02g45100.1LOC_Os03g02390.1LOC_Os04g47900.1LOC_Os10g37530.1
Probe Set ID Os.56106.1.S1_atOs.7624.1.S1_atOs.55683.1.S1_atOs.46850.1.S1_at
Developmental Expression Seed, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 11 of 4141 of 4120 of 4141 of 41
Stress expression HeatControl (D,S,C), Drought, Salt, Cold, Control (H), HeatSalt, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 2.7884110.745784.446619.09226
Inflorescence (P2, 3-5 cm) 2.7974910.058194.783428.47219
Inflorescence (P3, 5-10 cm) 2.7188210.264744.208018.78616
Inflorescence (P4, 10-15 cm) 3.1352610.661483.950978.82561
Inflorescence (P5, 15-22 cm) 3.158529.016413.800028.66380
Inflorescence (P6, 22-30 cm) 2.8815310.846004.368798.97740
Unpollenated stigma at antithesis 2.7007010.607595.626649.30035
Ovary at antithesis 2.5952710.327645.552919.93938
Embryo. 3.019499.737134.369268.98507
Endosperm. 7.7165910.552493.5461410.00829
Seed (S1, 0-2 days after pollenation) 2.6174510.389623.020638.63850
Seed (S2, 3-4 days after pollenation) 2.643279.218703.311258.89127
Seed (S3, 5-10 days after pollenation) 2.983889.477092.982458.78714
Seed (S4, 11-20 days after pollenation) 5.614639.143183.119169.00391
Seed (S5, 21-29 days after pollenation) 7.725539.413613.031229.14774
Dry seed 2.570689.692492.993519.03042
1h seed (aerobic) 2.5840410.229773.031569.56568
1h seed (anaerobic) 2.582699.996063.064409.22981
3h seed (aerobic) 2.5170111.543712.9126410.26096
3h seed (anaerobic) 2.5287311.064722.9202610.27971
12h seed (aerobic) 2.5492811.022022.941999.15350
12h seed (anaerobic) 2.5926810.606982.927249.34166
24h (aerobic) 2.5744710.717432.876098.68898
24h seed (anaerobic) 2.5635610.113872.928278.75674
27h (aerobic) 2.9476410.654312.969158.49262
27h (anaerobic) 2.8018010.239882.913188.48874
30h (aerobic) 2.8306710.628522.908628.57247
30h (anaerobic) 2.7667310.038792.863638.60175
27h (24h N + 3h A) 2.8062210.893862.936228.90570
27h (24h A + 3h N) 2.834459.918162.979808.35246
30h (24h N + 6h A) 2.7574410.785122.892388.70813
30h (24h A + 6h N) 2.848429.847382.972518.33681
Aerobic grown coleoptiles (4 days) 2.826159.038132.948766.32771
Anoxic grown coleoptiles (4 days) 2.848169.207203.106816.54831
10-day old seedling 2.8220910.593203.181078.13465
Leaf from 7-day seedling 2.7664410.664013.084038.22223
Mature leaf 3.0553611.025632.857918.25089
Young Leaf 2.683499.325612.802176.03251
Semi Apical Meristem 2.607998.786084.437759.35623
Root from 7-day old seedling 2.6121310.081112.826548.51816
Root from 7-day Seedling 2.8425011.076875.528948.96391