ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM21,TIM21-LIKE-1,TIM21-LIKE-2 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT2G40800AT3G56430
Probe Set ID 266047_at251685_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 47 of 7370 of 73
Stress expression Control, Drought, ColdControl, Drought, Salt, Cold, Heat
flower 2 7.195276.81048
flower, stage 9 7.266686.94643
flower, stage 10/11 7.309736.38706
flower, stage 12 7.149676.41863
flower, stage 12, sepals 7.341186.84130
flower, stage 12, petals 7.664996.54930
flower, stage 12, stamens 8.221645.94205
flower, stage 12, carpels 7.316236.79587
flower, stage 15 6.874176.12957
flower, stage 15, pedicels 6.884886.30264
flower, stage 15, sepals 7.357176.46981
flower, stage 15, petals 7.432196.40427
flower, stage 15, stamen 7.296375.57070
flower, stage 15, carpels 7.157086.62665
mature pollen 8.279996.19204
cotyledon 7.270836.25229
silique, with seeds stage 3; mid globular to early heart embryo 7.375216.15832
silique, wth seeds stage 4; early to late heart embryo 6.779056.18705
silique, with seeds stage 5; late heart to mid torpedo embryo 6.726276.10985
seed, stage 6; mid to late torpedo embryos 7.049966.48115
seed, stage 7; late torpedo to early walking-stick embryo 7.081016.39980
seed, stage 8; walking-stick to early curled-cotyledons embryo 7.003795.90670
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 7.297116.14206
seed, stage 10; green-cotyledons embryo 7.057746.36156
Germination - Harvested seed, collected before dessication 6.756958.61001
Germination - 0 h dry seed, 15d after collection 6.833788.84533
Germination - 1 h strat 6.903999.39335
Germination - 12 h strat 6.788098.85772
Germination - 48 h strat 6.419059.96557
Germination - 1 h SL 6.3036510.02840
Germination - 6 h SL 7.082519.95040
Germination - 12 h SL 7.689889.46345
Germination - 24 h SL 7.842609.41786
Germination - 48 h SL 8.249438.89011
hypocotyl 7.262296.36028
seedling, green parts 7.290337.07448
seedling, green parts 6.695635.49732
seedling, green parts 6.915436.00535
seedling, green parts 6.598605.62854
seedling, green parts 6.719795.47256
shoot apex, vegetative + young leaves 7.309667.23196
leaves 1 + 2 7.382806.66048
shoot apex, vegetative 7.501177.45343
shoot apex, transition (before bolting) 7.690067.17921
shoot apex, inflorescence (after bolting) 7.419007.45034
rosette leaf #4, 1 cm long 7.170476.91265
rosette leaf # 2 7.115745.84151
rosette leaf # 4 7.151905.50535
rosette leaf # 6 7.367336.17866
rosette leaf # 8 7.353846.29406
rosette leaf # 10 7.193826.10872
rosette leaf # 12 7.228736.51028
leaf 7, petiole 7.356215.95158
leaf 7, proximal half 7.342135.86971
leaf 7, distal half 7.208065.67923
developmental drift, entire rosette after transition to flowering, but before bolting 7.252056.06963
developmental drift, entire rosette after transition to flowering, but before bolting 7.083575.94203
developmental drift, entire rosette after transition to flowering, but before bolting 6.919516.03153
senescing leaf 6.836435.95928
cauline leaf 6.653115.07822
vegetative rosette 7.039456.48695
vegetative rosette 7.101726.72921
vegetative rosette 7.027866.90107
leaf 7.318356.64857
stem, 2nd internode 6.946354.71936
stem, 1st node 7.328785.56718
root 8.449956.74322
root 7.826345.91593
root 8.221986.18643
root 7.887906.58844
roots 7.728336.10417
root 7.164595.38611
root 7.734805.78383
Rice RNA Transcript Expression  
Locus LOC_Os01g07382.1LOC_Os03g14890.1
Probe Set ID Os.38232.1.S1_atOsAffx.12867.1.S1_s_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 4140 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 8.279027.46613
Inflorescence (P2, 3-5 cm) 9.014847.63237
Inflorescence (P3, 5-10 cm) 8.171657.39108
Inflorescence (P4, 10-15 cm) 8.037367.67811
Inflorescence (P5, 15-22 cm) 8.327897.22948
Inflorescence (P6, 22-30 cm) 8.319557.38183
Unpollenated stigma at antithesis 8.924678.86334
Ovary at antithesis 9.066118.77720
Embryo. 9.129767.86391
Endosperm. 9.213947.21063
Seed (S1, 0-2 days after pollenation) 7.064476.33228
Seed (S2, 3-4 days after pollenation) 7.295036.63550
Seed (S3, 5-10 days after pollenation) 7.191116.45166
Seed (S4, 11-20 days after pollenation) 6.966895.50443
Seed (S5, 21-29 days after pollenation) 7.341166.19258
Dry seed 8.212797.34674
1h seed (aerobic) 8.319597.10680
1h seed (anaerobic) 8.448857.12203
3h seed (aerobic) 8.201357.11787
3h seed (anaerobic) 8.049617.27231
12h seed (aerobic) 8.221588.27059
12h seed (anaerobic) 8.242008.06060
24h (aerobic) 8.337858.30925
24h seed (anaerobic) 8.124757.92475
27h (aerobic) 8.957548.52353
27h (anaerobic) 8.762568.12945
30h (aerobic) 8.846358.34342
30h (anaerobic) 8.674067.90083
27h (24h N + 3h A) 8.814398.52966
27h (24h A + 3h N) 8.936838.31293
30h (24h N + 6h A) 8.684768.59359
30h (24h A + 6h N) 8.885718.03117
Aerobic grown coleoptiles (4 days) 7.119085.97808
Anoxic grown coleoptiles (4 days) 6.908906.28353
10-day old seedling 8.496585.13754
Leaf from 7-day seedling 8.457155.50093
Mature leaf 7.721426.89415
Young Leaf 7.574946.38511
Semi Apical Meristem 7.911148.20976
Root from 7-day old seedling 8.728327.75647
Root from 7-day Seedling 9.394296.97469