ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM17 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT1G20350AT2G37410AT5G11690
Probe Set ID 255941_at265968_at250333_at
Developmental Expression Silique, Seed, Seedling, Leaf, FlowerSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 28 of 7373 of 7372 of 73
Stress expression HeatControl, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 3.9223510.471007.88272
flower, stage 9 2.4037610.560207.92006
flower, stage 10/11 2.8276510.259607.68242
flower, stage 12 5.0795010.304507.57425
flower, stage 12, sepals 5.0086310.087307.01870
flower, stage 12, petals 2.5519310.279708.09438
flower, stage 12, stamens 2.815059.817656.94660
flower, stage 12, carpels 7.1214210.760208.29299
flower, stage 15 5.3246410.380407.07079
flower, stage 15, pedicels 2.8032810.321507.92141
flower, stage 15, sepals 6.8972110.354805.58697
flower, stage 15, petals 3.7228910.115506.65636
flower, stage 15, stamen 3.246519.876496.32690
flower, stage 15, carpels 6.6625410.992507.92766
mature pollen 4.1768910.877906.08773
cotyledon 7.9398510.018907.36289
silique, with seeds stage 3; mid globular to early heart embryo 5.394239.630257.98235
silique, wth seeds stage 4; early to late heart embryo 6.5115810.125807.22346
silique, with seeds stage 5; late heart to mid torpedo embryo 6.6369110.166607.09140
seed, stage 6; mid to late torpedo embryos 6.5977710.167507.26383
seed, stage 7; late torpedo to early walking-stick embryo 6.9445710.043306.72172
seed, stage 8; walking-stick to early curled-cotyledons embryo 7.5861411.371405.49097
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 6.3694211.982004.79998
seed, stage 10; green-cotyledons embryo 7.1060212.057605.42774
Germination - Harvested seed, collected before dessication 4.7926113.370007.44976
Germination - 0 h dry seed, 15d after collection 4.8277313.343907.26666
Germination - 1 h strat 4.8287013.586907.85853
Germination - 12 h strat 4.8951913.683608.29725
Germination - 48 h strat 4.5064313.289509.26378
Germination - 1 h SL 4.4641213.235109.43181
Germination - 6 h SL 4.3404312.707909.83086
Germination - 12 h SL 4.1963712.090309.71296
Germination - 24 h SL 4.0516511.373408.89696
Germination - 48 h SL 4.0472710.629908.69960
hypocotyl 2.5938610.372107.83871
seedling, green parts 3.2813710.174107.89500
seedling, green parts 7.5062010.483407.14805
seedling, green parts 6.0023510.015207.47962
seedling, green parts 7.8230810.785607.48368
seedling, green parts 7.0248610.777807.05526
shoot apex, vegetative + young leaves 3.0019110.582208.27976
leaves 1 + 2 3.3159110.039308.02685
shoot apex, vegetative 2.5019410.989108.33838
shoot apex, transition (before bolting) 2.7054711.025508.72486
shoot apex, inflorescence (after bolting) 2.5330710.865108.58749
rosette leaf #4, 1 cm long 3.3436310.298208.11258
rosette leaf # 2 8.3093210.524907.00009
rosette leaf # 4 8.0727310.405107.27848
rosette leaf # 6 7.4669710.226807.52812
rosette leaf # 8 6.4678110.064407.72741
rosette leaf # 10 4.854989.981747.88327
rosette leaf # 12 3.2057310.013408.22844
leaf 7, petiole 4.3345810.034407.59333
leaf 7, proximal half 6.491079.851027.44093
leaf 7, distal half 7.6516510.154707.23444
developmental drift, entire rosette after transition to flowering, but before bolting 7.0637910.193707.63648
developmental drift, entire rosette after transition to flowering, but before bolting 5.6268110.421607.68688
developmental drift, entire rosette after transition to flowering, but before bolting 6.4548910.302107.52776
senescing leaf 7.6828611.287706.58795
cauline leaf 7.6751710.600506.94324
vegetative rosette 2.679119.979437.98410
vegetative rosette 3.3109310.227807.99503
vegetative rosette 2.7153010.465408.00259
leaf 3.9595610.149307.65575
stem, 2nd internode 3.9563010.754106.63365
stem, 1st node 3.6386610.393907.31454
root 2.8091110.432507.73160
root 2.6138210.890107.36520
root 2.7836010.252307.43475
root 2.5836810.780108.34726
roots 2.6807911.275708.34911
root 2.7602711.131407.04433
root 2.6829910.673307.17065
Rice RNA Transcript Expression  
Locus LOC_Os03g30200.1LOC_Os03g30220.1LOC_Os05g07250.1LOC_Os07g41330.1
Probe Set ID Os.7354.1.S1_atOsAffx.25293.1.S1_atOsAffx.27250.3.S1_x_atOsAffx.5591.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerNot expressedGermination, Seedling, Germination (N)Seed, Germination, Germination (N)
No. of tissues expressed in 35 of 410 of 414 of 416 of 41
Stress expression Control (D,S,C), Control (H), HeatControl (H), HeatDrought, Control (H)
Young inflorescence (P1, upto 3 cm) 3.957592.450812.316402.43135
Inflorescence (P2, 3-5 cm) 4.057972.744302.316402.43682
Inflorescence (P3, 5-10 cm) 4.498572.472652.337662.45294
Inflorescence (P4, 10-15 cm) 3.726482.450812.695282.44646
Inflorescence (P5, 15-22 cm) 3.719782.450812.314362.57642
Inflorescence (P6, 22-30 cm) 4.283002.449142.299242.43682
Unpollenated stigma at antithesis 2.451682.340102.240542.31518
Ovary at antithesis 2.997292.337472.240542.31518
Embryo. 3.120112.703932.275782.45258
Endosperm. 7.062712.979912.262053.02440
Seed (S1, 0-2 days after pollenation) 2.686242.758022.354123.27669
Seed (S2, 3-4 days after pollenation) 2.726552.786762.342023.08856
Seed (S3, 5-10 days after pollenation) 2.751742.772042.354123.29871
Seed (S4, 11-20 days after pollenation) 2.687673.009852.434684.42235
Seed (S5, 21-29 days after pollenation) 3.173554.003882.664484.49264
Dry seed 4.878922.662663.389655.74065
1h seed (aerobic) 5.407922.639723.468057.03058
1h seed (anaerobic) 5.467872.639663.584516.02326
3h seed (aerobic) 6.361292.639693.575817.56339
3h seed (anaerobic) 5.598522.639733.467987.47925
12h seed (aerobic) 6.500642.640913.082903.47836
12h seed (anaerobic) 7.456812.628393.018253.24812
24h (aerobic) 5.666042.630463.060433.14470
24h seed (anaerobic) 6.038192.862583.059793.50605
27h (aerobic) 5.461192.835962.307762.35436
27h (anaerobic) 5.615492.822722.305822.33353
30h (aerobic) 5.530092.822722.324422.33108
30h (anaerobic) 5.744592.822722.307762.33211
27h (24h N + 3h A) 5.314562.822722.313432.33400
27h (24h A + 3h N) 5.625652.949492.305632.35584
30h (24h N + 6h A) 5.655922.783292.446652.33213
30h (24h A + 6h N) 5.380002.822722.305632.33983
Aerobic grown coleoptiles (4 days) 4.574962.505792.407172.79869
Anoxic grown coleoptiles (4 days) 5.057672.435132.360053.14271
10-day old seedling 2.403982.578912.262052.44924
Leaf from 7-day seedling 2.377182.575872.262052.39530
Mature leaf 2.382093.623022.365582.38646
Young Leaf 2.425483.684302.288182.38034
Semi Apical Meristem 2.340903.133712.316322.38389
Root from 7-day old seedling 2.347963.228642.311692.37715
Root from 7-day Seedling 3.533532.572422.262052.45565