MPIC
RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm) | 2 | 7 | 12 | Global expression heatmaps (Excel): Arabidopsis Rice |
| Arabidopsis RNA Transcript Expression | |
|---|---|
| Locus | AT2G29530 |
| Probe Set ID | 266239_at |
| Developmental Expression | Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in | 73 of 73 |
| Stress expression | Control, Drought, Salt, Cold, Heat |
| flower 2 | 10.28230 |
| flower, stage 9 | 10.41060 |
| flower, stage 10/11 | 10.07100 |
| flower, stage 12 | 10.17620 |
| flower, stage 12, sepals | 10.26020 |
| flower, stage 12, petals | 10.17690 |
| flower, stage 12, stamens | 9.96323 |
| flower, stage 12, carpels | 10.55710 |
| flower, stage 15 | 9.73187 |
| flower, stage 15, pedicels | 9.72314 |
| flower, stage 15, sepals | 9.90484 |
| flower, stage 15, petals | 9.61308 |
| flower, stage 15, stamen | 8.56281 |
| flower, stage 15, carpels | 10.40400 |
| mature pollen | 8.81848 |
| cotyledon | 9.20269 |
| silique, with seeds stage 3; mid globular to early heart embryo | 9.95874 |
| silique, wth seeds stage 4; early to late heart embryo | 8.92315 |
| silique, with seeds stage 5; late heart to mid torpedo embryo | 8.78009 |
| seed, stage 6; mid to late torpedo embryos | 9.43894 |
| seed, stage 7; late torpedo to early walking-stick embryo | 9.40791 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo | 9.28670 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo | 8.98385 |
| seed, stage 10; green-cotyledons embryo | 8.98301 |
| Germination - Harvested seed, collected before dessication | 11.24630 |
| Germination - 0 h dry seed, 15d after collection | 10.95310 |
| Germination - 1 h strat | 11.07430 |
| Germination - 12 h strat | 10.88420 |
| Germination - 48 h strat | 12.37040 |
| Germination - 1 h SL | 12.63510 |
| Germination - 6 h SL | 13.19160 |
| Germination - 12 h SL | 13.33770 |
| Germination - 24 h SL | 12.72870 |
| Germination - 48 h SL | 11.56690 |
| hypocotyl | 10.45880 |
| seedling, green parts | 9.92756 |
| seedling, green parts | 8.89671 |
| seedling, green parts | 9.60998 |
| seedling, green parts | 9.15067 |
| seedling, green parts | 9.06371 |
| shoot apex, vegetative + young leaves | 10.65820 |
| leaves 1 + 2 | 9.83371 |
| shoot apex, vegetative | 11.05490 |
| shoot apex, transition (before bolting) | 11.06370 |
| shoot apex, inflorescence (after bolting) | 10.97270 |
| rosette leaf #4, 1 cm long | 10.41950 |
| rosette leaf # 2 | 9.09735 |
| rosette leaf # 4 | 9.23955 |
| rosette leaf # 6 | 9.29250 |
| rosette leaf # 8 | 9.72679 |
| rosette leaf # 10 | 9.88836 |
| rosette leaf # 12 | 10.28230 |
| leaf 7, petiole | 10.03450 |
| leaf 7, proximal half | 9.61790 |
| leaf 7, distal half | 9.33636 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 9.84700 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 9.84348 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 9.78231 |
| senescing leaf | 9.01969 |
| cauline leaf | 8.72720 |
| vegetative rosette | 9.92095 |
| vegetative rosette | 10.10430 |
| vegetative rosette | 10.55050 |
| leaf | 9.31050 |
| stem, 2nd internode | 9.10955 |
| stem, 1st node | 9.77939 |
| root | 10.84310 |
| root | 10.27070 |
| root | 10.62160 |
| root | 11.29690 |
| roots | 11.11990 |
| root | 9.94075 |
| root | 10.13420 |
| Rice RNA Transcript Expression | ||
|---|---|---|
| Locus | LOC_Os03g61019.1 | LOC_Os07g13950.1 |
| Probe Set ID | Os.37339.1.S1_at | Os.30861.1.S1_at |
| Developmental Expression | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower |
| No. of tissues expressed in | 41 of 41 | 41 of 41 |
| Stress expression | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat |
| Young inflorescence (P1, upto 3 cm) | 10.28380 | 8.51185 |
| Inflorescence (P2, 3-5 cm) | 11.17907 | 8.77228 |
| Inflorescence (P3, 5-10 cm) | 10.69825 | 8.82742 |
| Inflorescence (P4, 10-15 cm) | 10.40118 | 8.69289 |
| Inflorescence (P5, 15-22 cm) | 10.56338 | 9.43128 |
| Inflorescence (P6, 22-30 cm) | 10.10979 | 8.68773 |
| Unpollenated stigma at antithesis | 10.71160 | 10.10924 |
| Ovary at antithesis | 10.40029 | 9.65953 |
| Embryo. | 13.20926 | 10.29492 |
| Endosperm. | 11.50016 | 10.55841 |
| Seed (S1, 0-2 days after pollenation) | 9.30523 | 7.60046 |
| Seed (S2, 3-4 days after pollenation) | 8.81713 | 7.64312 |
| Seed (S3, 5-10 days after pollenation) | 8.45921 | 7.16796 |
| Seed (S4, 11-20 days after pollenation) | 8.22708 | 6.66456 |
| Seed (S5, 21-29 days after pollenation) | 8.76804 | 6.72116 |
| Dry seed | 10.91517 | 6.86954 |
| 1h seed (aerobic) | 10.91893 | 6.69478 |
| 1h seed (anaerobic) | 11.03965 | 6.99276 |
| 3h seed (aerobic) | 10.75914 | 7.41711 |
| 3h seed (anaerobic) | 10.87102 | 6.92855 |
| 12h seed (aerobic) | 11.34209 | 9.00735 |
| 12h seed (anaerobic) | 11.06048 | 9.11937 |
| 24h (aerobic) | 11.33632 | 9.07965 |
| 24h seed (anaerobic) | 10.79557 | 8.85809 |
| 27h (aerobic) | 11.26368 | 9.50395 |
| 27h (anaerobic) | 10.96191 | 9.19645 |
| 30h (aerobic) | 11.22459 | 9.50744 |
| 30h (anaerobic) | 10.86731 | 9.13052 |
| 27h (24h N + 3h A) | 11.61598 | 9.68473 |
| 27h (24h A + 3h N) | 10.67567 | 8.30361 |
| 30h (24h N + 6h A) | 11.56523 | 9.75216 |
| 30h (24h A + 6h N) | 10.45260 | 8.60045 |
| Aerobic grown coleoptiles (4 days) | 7.50371 | 7.71670 |
| Anoxic grown coleoptiles (4 days) | 8.59237 | 6.86004 |
| 10-day old seedling | 10.66297 | 8.65366 |
| Leaf from 7-day seedling | 10.88264 | 8.96454 |
| Mature leaf | 10.04667 | 9.12264 |
| Young Leaf | 10.56345 | 9.44565 |
| Semi Apical Meristem | 11.17750 | 10.30596 |
| Root from 7-day old seedling | 10.77024 | 10.21941 |
| Root from 7-day Seedling | 12.09899 | 10.07576 |