MPIC — SAM50 RNA Expression
RNA transcript expression levels are shown for Arabidopsis and rice,
representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm)
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2
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7
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12
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Global expression heatmaps (Excel): Arabidopsis Rice
|
| Arabidopsis RNA Transcript Expression |
|
| Locus |
AT5G05520 |
| Probe Set ID |
250792_at |
| Developmental Expression |
Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in |
73 of 73 |
| Stress expression |
Control, Drought, Salt, Cold, Heat |
| flower 2 |
7.94492 |
| flower, stage 9 |
8.09887 |
| flower, stage 10/11 |
7.70486 |
| flower, stage 12 |
7.74859 |
| flower, stage 12, sepals |
7.79122 |
| flower, stage 12, petals |
8.03933 |
| flower, stage 12, stamens |
8.13073 |
| flower, stage 12, carpels |
7.85457 |
| flower, stage 15 |
7.47375 |
| flower, stage 15, pedicels |
7.73611 |
| flower, stage 15, sepals |
7.83362 |
| flower, stage 15, petals |
7.94238 |
| flower, stage 15, stamen |
7.67791 |
| flower, stage 15, carpels |
7.90014 |
| mature pollen |
8.34417 |
| cotyledon |
7.48847 |
| silique, with seeds stage 3; mid globular to early heart embryo |
7.68069 |
| silique, wth seeds stage 4; early to late heart embryo |
7.54308 |
| silique, with seeds stage 5; late heart to mid torpedo embryo |
7.54164 |
| seed, stage 6; mid to late torpedo embryos |
7.75115 |
| seed, stage 7; late torpedo to early walking-stick embryo |
7.67067 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo |
8.47904 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo |
8.61602 |
| seed, stage 10; green-cotyledons embryo |
8.65372 |
| Germination - Harvested seed, collected before dessication |
10.58000 |
| Germination - 0 h dry seed, 15d after collection |
10.48830 |
| Germination - 1 h strat |
10.87180 |
| Germination - 12 h strat |
11.33280 |
| Germination - 48 h strat |
11.58070 |
| Germination - 1 h SL |
11.40530 |
| Germination - 6 h SL |
10.84400 |
| Germination - 12 h SL |
10.29820 |
| Germination - 24 h SL |
9.90062 |
| Germination - 48 h SL |
9.34657 |
| hypocotyl |
7.96296 |
| seedling, green parts |
8.48323 |
| seedling, green parts |
7.92196 |
| seedling, green parts |
7.81850 |
| seedling, green parts |
7.78129 |
| seedling, green parts |
7.63192 |
| shoot apex, vegetative + young leaves |
8.20983 |
| leaves 1 + 2 |
7.92789 |
| shoot apex, vegetative |
8.42020 |
| shoot apex, transition (before bolting) |
8.30871 |
| shoot apex, inflorescence (after bolting) |
8.27225 |
| rosette leaf #4, 1 cm long |
8.25452 |
| rosette leaf # 2 |
7.27313 |
| rosette leaf # 4 |
7.45074 |
| rosette leaf # 6 |
7.42252 |
| rosette leaf # 8 |
7.69452 |
| rosette leaf # 10 |
7.69763 |
| rosette leaf # 12 |
7.85032 |
| leaf 7, petiole |
7.78557 |
| leaf 7, proximal half |
7.59466 |
| leaf 7, distal half |
7.51468 |
| developmental drift, entire rosette after transition to flowering, but before bolting |
7.71054 |
| developmental drift, entire rosette after transition to flowering, but before bolting |
7.80965 |
| developmental drift, entire rosette after transition to flowering, but before bolting |
7.57645 |
| senescing leaf |
7.80901 |
| cauline leaf |
7.60840 |
| vegetative rosette |
7.76978 |
| vegetative rosette |
8.23033 |
| vegetative rosette |
8.42506 |
| leaf |
7.80061 |
| stem, 2nd internode |
7.59877 |
| stem, 1st node |
7.42295 |
| root |
8.59148 |
| root |
8.63709 |
| root |
8.64522 |
| root |
8.59598 |
| roots |
8.83661 |
| root |
8.29339 |
| root |
8.18552 |
| Rice RNA Transcript Expression |
|
| Locus |
LOC_Os05g39390.1 | LOC_Os11g01490.2 |
| Probe Set ID |
Os.4611.1.S1_at | Os.28272.1.S1_at |
| Developmental Expression |
Not expressed | Not expressed |
| No. of tissues expressed in |
0 of 41 | 0 of 41 |
| Stress expression |
| Heat |
| Young inflorescence (P1, upto 3 cm) |
2.19072 | 2.75029 |
| Inflorescence (P2, 3-5 cm) |
2.19951 | 2.73668 |
| Inflorescence (P3, 5-10 cm) |
2.15597 | 2.72766 |
| Inflorescence (P4, 10-15 cm) |
2.16489 | 2.71023 |
| Inflorescence (P5, 15-22 cm) |
2.16182 | 2.69944 |
| Inflorescence (P6, 22-30 cm) |
2.16073 | 2.69257 |
| Unpollenated stigma at antithesis |
2.16377 | 2.74858 |
| Ovary at antithesis |
2.13176 | 2.64715 |
| Embryo. |
2.18653 | 2.87472 |
| Endosperm. |
2.29914 | 3.18343 |
| Seed (S1, 0-2 days after pollenation) |
2.22660 | 2.71875 |
| Seed (S2, 3-4 days after pollenation) |
2.20704 | 2.67912 |
| Seed (S3, 5-10 days after pollenation) |
2.21205 | 2.71108 |
| Seed (S4, 11-20 days after pollenation) |
2.25090 | 2.80065 |
| Seed (S5, 21-29 days after pollenation) |
2.23781 | 2.73310 |
| Dry seed |
2.22791 | 2.75505 |
| 1h seed (aerobic) |
2.22355 | 2.75516 |
| 1h seed (anaerobic) |
2.21597 | 2.73838 |
| 3h seed (aerobic) |
2.20111 | 2.72061 |
| 3h seed (anaerobic) |
2.20095 | 2.72782 |
| 12h seed (aerobic) |
2.20240 | 2.72996 |
| 12h seed (anaerobic) |
2.21097 | 2.73634 |
| 24h (aerobic) |
2.20143 | 2.72624 |
| 24h seed (anaerobic) |
2.20699 | 2.73356 |
| 27h (aerobic) |
2.21357 | 2.82704 |
| 27h (anaerobic) |
2.19448 | 2.79132 |
| 30h (aerobic) |
2.18648 | 2.78541 |
| 30h (anaerobic) |
2.17766 | 2.77644 |
| 27h (24h N + 3h A) |
2.17657 | 2.78868 |
| 27h (24h A + 3h N) |
2.20976 | 2.82388 |
| 30h (24h N + 6h A) |
2.17441 | 2.77935 |
| 30h (24h A + 6h N) |
2.20589 | 2.80441 |
| Aerobic grown coleoptiles (4 days) |
2.24853 | 2.80131 |
| Anoxic grown coleoptiles (4 days) |
2.24628 | 2.84626 |
| 10-day old seedling |
2.14859 | 2.81442 |
| Leaf from 7-day seedling |
2.12534 | 2.78365 |
| Mature leaf |
2.23539 | 2.69203 |
| Young Leaf |
2.24144 | 2.73879 |
| Semi Apical Meristem |
2.21666 | 2.67126 |
| Root from 7-day old seedling |
2.22236 | 2.67635 |
| Root from 7-day Seedling |
2.15564 | 2.80998 |
