ARC Centre of Excellence for Plant Energy Biology

MPIC — PreP1,PreP2,CYM1 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT3G19170AT1G49630
Probe Set ID 257033_at261602_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 72 of 7369 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 10.270406.44556
flower, stage 9 10.089706.63627
flower, stage 10/11 10.383206.71020
flower, stage 12 10.422506.17209
flower, stage 12, sepals 11.968106.41332
flower, stage 12, petals 10.421906.66792
flower, stage 12, stamens 9.435655.46470
flower, stage 12, carpels 9.590166.77790
flower, stage 15 10.588805.71246
flower, stage 15, pedicels 10.912006.84750
flower, stage 15, sepals 12.029506.01334
flower, stage 15, petals 11.236405.84671
flower, stage 15, stamen 10.776905.30232
flower, stage 15, carpels 9.992186.53150
mature pollen 5.708276.98814
cotyledon 11.982807.06552
silique, with seeds stage 3; mid globular to early heart embryo 9.891075.70408
silique, wth seeds stage 4; early to late heart embryo 10.125105.82388
silique, with seeds stage 5; late heart to mid torpedo embryo 10.172405.92133
seed, stage 6; mid to late torpedo embryos 9.474386.08217
seed, stage 7; late torpedo to early walking-stick embryo 9.552866.07069
seed, stage 8; walking-stick to early curled-cotyledons embryo 10.414806.44490
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 10.811306.76192
seed, stage 10; green-cotyledons embryo 11.022506.51121
Germination - Harvested seed, collected before dessication 11.792006.63171
Germination - 0 h dry seed, 15d after collection 11.882907.11597
Germination - 1 h strat 12.033307.37526
Germination - 12 h strat 11.745306.98928
Germination - 48 h strat 11.553506.96563
Germination - 1 h SL 11.712707.14609
Germination - 6 h SL 12.069008.16505
Germination - 12 h SL 11.869308.57756
Germination - 24 h SL 11.289907.58760
Germination - 48 h SL 11.285407.19665
hypocotyl 9.491786.02902
seedling, green parts 12.194608.65065
seedling, green parts 11.422906.91531
seedling, green parts 11.143506.89605
seedling, green parts 11.049006.50173
seedling, green parts 11.204606.38379
shoot apex, vegetative + young leaves 11.200107.71821
leaves 1 + 2 12.195608.20276
shoot apex, vegetative 10.616407.42655
shoot apex, transition (before bolting) 9.727527.05697
shoot apex, inflorescence (after bolting) 9.708317.13542
rosette leaf #4, 1 cm long 11.894608.06488
rosette leaf # 2 11.250006.57239
rosette leaf # 4 11.321706.31059
rosette leaf # 6 11.261306.56807
rosette leaf # 8 11.367106.92466
rosette leaf # 10 11.350907.19216
rosette leaf # 12 11.417107.68995
leaf 7, petiole 11.110306.41209
leaf 7, proximal half 11.736606.96759
leaf 7, distal half 11.612206.67087
developmental drift, entire rosette after transition to flowering, but before bolting 11.239906.90854
developmental drift, entire rosette after transition to flowering, but before bolting 11.206606.74564
developmental drift, entire rosette after transition to flowering, but before bolting 11.145406.89998
senescing leaf 10.937006.06519
cauline leaf 11.242806.28192
vegetative rosette 11.721807.39446
vegetative rosette 11.434407.98823
vegetative rosette 11.266407.86688
leaf 11.839507.19938
stem, 2nd internode 9.217155.48998
stem, 1st node 9.317345.39360
root 9.457045.25879
root 9.126385.43432
root 9.234515.16850
root 8.647756.10444
roots 8.220795.81583
root 9.308695.20688
root 9.321675.23879
Rice RNA Transcript Expression  
Locus LOC_Os02g52390.1
Probe Set ID OsAffx.24834.1.S1_x_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 8.65036
Inflorescence (P2, 3-5 cm) 7.41256
Inflorescence (P3, 5-10 cm) 7.78172
Inflorescence (P4, 10-15 cm) 8.17624
Inflorescence (P5, 15-22 cm) 8.67678
Inflorescence (P6, 22-30 cm) 8.33644
Unpollenated stigma at antithesis 9.63745
Ovary at antithesis 9.85255
Embryo. 8.89079
Endosperm. 5.96588
Seed (S1, 0-2 days after pollenation) 9.38643
Seed (S2, 3-4 days after pollenation) 8.25537
Seed (S3, 5-10 days after pollenation) 8.25510
Seed (S4, 11-20 days after pollenation) 8.14083
Seed (S5, 21-29 days after pollenation) 8.85711
Dry seed 8.99725
1h seed (aerobic) 8.58415
1h seed (anaerobic) 8.82308
3h seed (aerobic) 7.94864
3h seed (anaerobic) 8.05316
12h seed (aerobic) 9.03472
12h seed (anaerobic) 8.69981
24h (aerobic) 8.89444
24h seed (anaerobic) 8.47647
27h (aerobic) 9.00696
27h (anaerobic) 8.52112
30h (aerobic) 8.93034
30h (anaerobic) 8.26028
27h (24h N + 3h A) 8.79583
27h (24h A + 3h N) 8.95838
30h (24h N + 6h A) 8.99349
30h (24h A + 6h N) 8.69390
Aerobic grown coleoptiles (4 days) 6.28093
Anoxic grown coleoptiles (4 days) 6.36150
10-day old seedling 9.62469
Leaf from 7-day seedling 10.10565
Mature leaf 12.60812
Young Leaf 12.72144
Semi Apical Meristem 10.01546
Root from 7-day old seedling 7.95599
Root from 7-day Seedling 8.16803