ARC Centre of Excellence for Plant Energy Biology

MPIC — PAM18 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT2G35795AT3G09700AT5G03030
Probe Set ID 265826_at258716_at250934_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 73 of 7367 of 7373 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 8.640368.374968.63230
flower, stage 9 8.886068.499448.88282
flower, stage 10/11 8.728468.056088.90855
flower, stage 12 8.912757.722548.93760
flower, stage 12, sepals 9.235697.2159710.14370
flower, stage 12, petals 9.244037.6301010.68850
flower, stage 12, stamens 9.529256.608408.32297
flower, stage 12, carpels 9.190228.818878.68411
flower, stage 15 9.006587.239869.04562
flower, stage 15, pedicels 8.618656.486718.91356
flower, stage 15, sepals 9.551927.0968110.39110
flower, stage 15, petals 9.245446.795719.49464
flower, stage 15, stamen 8.966306.457418.97984
flower, stage 15, carpels 9.162508.409288.62822
mature pollen 8.823057.2331910.16700
cotyledon 9.000666.410149.76690
silique, with seeds stage 3; mid globular to early heart embryo 8.535407.360528.76772
silique, wth seeds stage 4; early to late heart embryo 8.510857.044848.85508
silique, with seeds stage 5; late heart to mid torpedo embryo 8.518096.804489.01052
seed, stage 6; mid to late torpedo embryos 8.610166.678009.04951
seed, stage 7; late torpedo to early walking-stick embryo 8.716216.072399.15404
seed, stage 8; walking-stick to early curled-cotyledons embryo 9.563307.0695510.15720
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 9.609426.8819410.64650
seed, stage 10; green-cotyledons embryo 9.864797.2918010.45020
Germination - Harvested seed, collected before dessication 11.287009.0652113.19890
Germination - 0 h dry seed, 15d after collection 11.310709.0714413.20550
Germination - 1 h strat 11.083009.1311013.36770
Germination - 12 h strat 10.707209.1913413.33730
Germination - 48 h strat 10.0291010.4138011.42400
Germination - 1 h SL 10.0872010.5204011.20640
Germination - 6 h SL 11.3392011.0724010.57820
Germination - 12 h SL 11.3612010.0547010.40690
Germination - 24 h SL 10.878708.7858710.07690
Germination - 48 h SL 9.961866.7490210.12150
hypocotyl 8.872327.224178.92404
seedling, green parts 8.127296.870499.11619
seedling, green parts 8.888016.450689.64262
seedling, green parts 8.758576.926459.51350
seedling, green parts 8.955426.899989.13335
seedling, green parts 8.605726.708328.80284
shoot apex, vegetative + young leaves 9.065698.297049.69444
leaves 1 + 2 8.969516.678599.82593
shoot apex, vegetative 9.205358.772709.21643
shoot apex, transition (before bolting) 9.299789.083828.88620
shoot apex, inflorescence (after bolting) 8.981399.004868.76542
rosette leaf #4, 1 cm long 8.945137.340939.66690
rosette leaf # 2 9.499096.804059.39651
rosette leaf # 4 9.167096.488249.50194
rosette leaf # 6 8.969556.557949.55625
rosette leaf # 8 8.855276.514409.61026
rosette leaf # 10 8.800966.797839.51473
rosette leaf # 12 8.827217.253989.76518
leaf 7, petiole 8.762506.727029.34948
leaf 7, proximal half 8.657886.617629.55737
leaf 7, distal half 8.770866.465319.70217
developmental drift, entire rosette after transition to flowering, but before bolting 8.762256.853459.32191
developmental drift, entire rosette after transition to flowering, but before bolting 8.915536.821229.38147
developmental drift, entire rosette after transition to flowering, but before bolting 8.877956.684359.29441
senescing leaf 9.265896.843848.75286
cauline leaf 9.303336.539349.24562
vegetative rosette 8.686297.058579.75555
vegetative rosette 8.814017.387139.76543
vegetative rosette 8.953967.706499.81181
leaf 8.988196.897449.28576
stem, 2nd internode 8.568056.245868.99360
stem, 1st node 8.251236.232489.21645
root 8.755327.354579.33893
root 8.468006.965479.36266
root 8.512016.981789.85579
root 9.270018.041508.86491
roots 9.265547.996028.72551
root 8.188227.062809.35826
root 8.327317.169949.28007
Rice RNA Transcript Expression  
Locus LOC_Os01g06454.1LOC_Os07g09450.1
Probe Set ID Os.1460.2.S1_atOs.49080.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 4141 of 41
Stress expression Drought, Salt, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 4.927529.42630
Inflorescence (P2, 3-5 cm) 5.023799.74167
Inflorescence (P3, 5-10 cm) 5.179139.31187
Inflorescence (P4, 10-15 cm) 5.040898.99888
Inflorescence (P5, 15-22 cm) 4.715859.13146
Inflorescence (P6, 22-30 cm) 5.605698.96921
Unpollenated stigma at antithesis 6.1086310.00399
Ovary at antithesis 5.8194110.45889
Embryo. 8.1513111.14888
Endosperm. 9.5968510.55797
Seed (S1, 0-2 days after pollenation) 4.156168.48325
Seed (S2, 3-4 days after pollenation) 4.918528.31216
Seed (S3, 5-10 days after pollenation) 4.965797.81591
Seed (S4, 11-20 days after pollenation) 5.219088.14986
Seed (S5, 21-29 days after pollenation) 6.175799.01803
Dry seed 7.879289.97541
1h seed (aerobic) 8.0972310.02026
1h seed (anaerobic) 8.1720110.01081
3h seed (aerobic) 8.266079.82850
3h seed (anaerobic) 8.110509.86286
12h seed (aerobic) 7.482529.84946
12h seed (anaerobic) 7.9549710.15945
24h (aerobic) 6.344239.63438
24h seed (anaerobic) 7.0242210.02695
27h (aerobic) 7.124719.82928
27h (anaerobic) 7.3901710.12440
30h (aerobic) 6.832839.75470
30h (anaerobic) 7.4574410.13451
27h (24h N + 3h A) 7.8048310.23036
27h (24h A + 3h N) 7.151949.83686
30h (24h N + 6h A) 7.1682210.04721
30h (24h A + 6h N) 7.183119.92985
Aerobic grown coleoptiles (4 days) 3.980737.27648
Anoxic grown coleoptiles (4 days) 4.048207.82942
10-day old seedling 4.334579.33039
Leaf from 7-day seedling 5.385849.08233
Mature leaf 6.135499.61144
Young Leaf 6.0525710.46581
Semi Apical Meristem 5.428969.95631
Root from 7-day old seedling 4.675909.43572
Root from 7-day Seedling 6.369919.87633