ARC Centre of Excellence for Plant Energy Biology

MPIC — PAM16 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT3G59280AT5G61880
Probe Set ID 251492_at247491_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 73 of 7364 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 9.819446.94919
flower, stage 9 9.850477.48085
flower, stage 10/11 9.708357.07442
flower, stage 12 9.946136.60719
flower, stage 12, sepals 10.646606.34261
flower, stage 12, petals 9.980286.66207
flower, stage 12, stamens 10.622206.39563
flower, stage 12, carpels 9.916687.52771
flower, stage 15 10.173006.38615
flower, stage 15, pedicels 9.495315.79454
flower, stage 15, sepals 11.353906.01947
flower, stage 15, petals 10.761805.26343
flower, stage 15, stamen 10.812104.50442
flower, stage 15, carpels 9.777587.37633
mature pollen 12.186506.20141
cotyledon 10.025005.33387
silique, with seeds stage 3; mid globular to early heart embryo 9.803236.21212
silique, wth seeds stage 4; early to late heart embryo 9.568766.27941
silique, with seeds stage 5; late heart to mid torpedo embryo 9.681096.37907
seed, stage 6; mid to late torpedo embryos 9.747936.32554
seed, stage 7; late torpedo to early walking-stick embryo 9.841195.79526
seed, stage 8; walking-stick to early curled-cotyledons embryo 10.553507.71827
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 10.410707.26356
seed, stage 10; green-cotyledons embryo 10.740508.06443
Germination - Harvested seed, collected before dessication 12.1971010.44910
Germination - 0 h dry seed, 15d after collection 12.0785010.40920
Germination - 1 h strat 12.4079010.49790
Germination - 12 h strat 12.4830010.37010
Germination - 48 h strat 12.7926010.45830
Germination - 1 h SL 12.7158010.63840
Germination - 6 h SL 12.0188011.45650
Germination - 12 h SL 11.5871010.64540
Germination - 24 h SL 11.430009.47114
Germination - 48 h SL 10.850307.82571
hypocotyl 9.409756.12758
seedling, green parts 9.621026.56939
seedling, green parts 10.037406.06386
seedling, green parts 10.000806.07673
seedling, green parts 10.006506.26812
seedling, green parts 9.768915.89841
shoot apex, vegetative + young leaves 9.970207.62310
leaves 1 + 2 10.077806.17564
shoot apex, vegetative 10.108007.96652
shoot apex, transition (before bolting) 10.012008.01120
shoot apex, inflorescence (after bolting) 9.863507.89778
rosette leaf #4, 1 cm long 9.916127.05364
rosette leaf # 2 10.130005.45598
rosette leaf # 4 9.955065.34615
rosette leaf # 6 10.037805.29088
rosette leaf # 8 9.994045.22712
rosette leaf # 10 9.989055.63460
rosette leaf # 12 9.939786.52262
leaf 7, petiole 9.801935.30650
leaf 7, proximal half 10.099805.46431
leaf 7, distal half 10.249905.29136
developmental drift, entire rosette after transition to flowering, but before bolting 9.684085.62165
developmental drift, entire rosette after transition to flowering, but before bolting 9.719145.58983
developmental drift, entire rosette after transition to flowering, but before bolting 9.697695.74193
senescing leaf 10.217806.10306
cauline leaf 9.991324.92858
vegetative rosette 9.615126.60245
vegetative rosette 9.516967.25142
vegetative rosette 9.665507.52576
leaf 9.637295.93775
stem, 2nd internode 9.608644.66995
stem, 1st node 9.434175.02610
root 10.204306.77833
root 9.758786.85456
root 9.990676.68417
root 10.011607.95205
roots 9.982957.72949
root 9.810816.40979
root 10.130506.42849
Rice RNA Transcript Expression  
Locus LOC_Os10g33910.1
Probe Set ID Os.46571.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 7.79059
Inflorescence (P2, 3-5 cm) 8.45750
Inflorescence (P3, 5-10 cm) 7.93481
Inflorescence (P4, 10-15 cm) 7.59214
Inflorescence (P5, 15-22 cm) 8.01100
Inflorescence (P6, 22-30 cm) 8.21948
Unpollenated stigma at antithesis 8.26916
Ovary at antithesis 7.68281
Embryo. 8.02153
Endosperm. 7.79407
Seed (S1, 0-2 days after pollenation) 7.64197
Seed (S2, 3-4 days after pollenation) 6.99172
Seed (S3, 5-10 days after pollenation) 7.23493
Seed (S4, 11-20 days after pollenation) 6.90035
Seed (S5, 21-29 days after pollenation) 7.01483
Dry seed 8.60994
1h seed (aerobic) 8.53326
1h seed (anaerobic) 8.61270
3h seed (aerobic) 8.46421
3h seed (anaerobic) 8.63849
12h seed (aerobic) 7.50981
12h seed (anaerobic) 7.73442
24h (aerobic) 7.28649
24h seed (anaerobic) 7.73815
27h (aerobic) 7.42700
27h (anaerobic) 7.95179
30h (aerobic) 7.55576
30h (anaerobic) 7.91754
27h (24h N + 3h A) 7.81239
27h (24h A + 3h N) 7.69013
30h (24h N + 6h A) 7.79173
30h (24h A + 6h N) 7.72521
Aerobic grown coleoptiles (4 days) 5.83292
Anoxic grown coleoptiles (4 days) 5.72215
10-day old seedling 7.68951
Leaf from 7-day seedling 7.66747
Mature leaf 8.67087
Young Leaf 8.92761
Semi Apical Meristem 7.59002
Root from 7-day old seedling 8.35233
Root from 7-day Seedling 8.16636