ARC Centre of Excellence for Plant Energy Biology

MPIC — OXA1 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT2G46470AT5G62050AT1G24490
Probe Set ID 263778_at247460_at265011_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 72 of 7373 of 7372 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 7.569067.338067.58743
flower, stage 9 7.763947.222227.66463
flower, stage 10/11 7.496267.182027.74912
flower, stage 12 7.246137.532837.68645
flower, stage 12, sepals 6.882178.546848.64377
flower, stage 12, petals 7.610537.917907.97239
flower, stage 12, stamens 6.550688.095508.05758
flower, stage 12, carpels 7.922377.668667.63275
flower, stage 15 6.829637.569488.20827
flower, stage 15, pedicels 7.494787.571177.78816
flower, stage 15, sepals 5.987188.685319.19732
flower, stage 15, petals 6.441907.660419.06775
flower, stage 15, stamen 6.508377.490268.61593
flower, stage 15, carpels 7.746837.649197.86614
mature pollen 5.817236.731566.91418
cotyledon 7.063127.858688.37169
silique, with seeds stage 3; mid globular to early heart embryo 7.618937.240637.13353
silique, wth seeds stage 4; early to late heart embryo 6.932837.155927.41925
silique, with seeds stage 5; late heart to mid torpedo embryo 6.887327.165177.46236
seed, stage 6; mid to late torpedo embryos 7.496297.364727.35841
seed, stage 7; late torpedo to early walking-stick embryo 7.545387.679277.76592
seed, stage 8; walking-stick to early curled-cotyledons embryo 8.432158.420829.80371
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 8.529028.8825610.40740
seed, stage 10; green-cotyledons embryo 8.798028.9447510.78120
Germination - Harvested seed, collected before dessication 9.4158810.7192011.96490
Germination - 0 h dry seed, 15d after collection 9.5877210.8750012.07770
Germination - 1 h strat 9.3901510.8689012.69520
Germination - 12 h strat 9.2424011.1948012.58110
Germination - 48 h strat 9.5118411.4677011.60200
Germination - 1 h SL 9.3886211.3702011.24740
Germination - 6 h SL 9.5572510.7205010.60730
Germination - 12 h SL 9.7011110.1102010.07840
Germination - 24 h SL 8.924689.800959.56279
Germination - 48 h SL 8.347569.412749.37097
hypocotyl 7.386237.709857.26458
seedling, green parts 7.456368.188429.21702
seedling, green parts 7.154587.462867.88541
seedling, green parts 7.195907.622007.95784
seedling, green parts 7.038857.521467.88257
seedling, green parts 6.856567.486077.88720
shoot apex, vegetative + young leaves 7.984297.606588.62664
leaves 1 + 2 7.533637.655228.58860
shoot apex, vegetative 8.110867.730838.30597
shoot apex, transition (before bolting) 8.250397.488517.75077
shoot apex, inflorescence (after bolting) 8.135627.331997.51910
rosette leaf #4, 1 cm long 7.928338.093808.82150
rosette leaf # 2 6.864867.967828.45940
rosette leaf # 4 6.998857.803948.17037
rosette leaf # 6 7.059617.804118.15615
rosette leaf # 8 7.258007.726648.12125
rosette leaf # 10 7.417547.692828.15903
rosette leaf # 12 7.673557.643588.31274
leaf 7, petiole 7.308427.844627.68349
leaf 7, proximal half 7.171197.519058.00533
leaf 7, distal half 7.064587.446038.08473
developmental drift, entire rosette after transition to flowering, but before bolting 7.215517.624878.04882
developmental drift, entire rosette after transition to flowering, but before bolting 7.351557.769938.20173
developmental drift, entire rosette after transition to flowering, but before bolting 7.295257.720658.04926
senescing leaf 6.275378.235979.42165
cauline leaf 6.364477.815688.80939
vegetative rosette 7.516457.474698.39676
vegetative rosette 7.734207.493228.46867
vegetative rosette 8.033387.702018.46176
leaf 7.486277.498738.02706
stem, 2nd internode 6.909897.210147.53153
stem, 1st node 7.014997.267007.10589
root 7.754258.366956.86580
root 7.656798.139426.86480
root 7.742538.143186.80015
root 8.108587.957466.84516
roots 8.125167.993916.65866
root 7.498038.271146.72892
root 7.526818.061386.94521
Rice RNA Transcript Expression  
Locus LOC_Os03g02480.1LOC_Os10g37690.1LOC_Os01g05800.1
Probe Set ID OsAffx.24943.1.S1_atOs.2507.1.S1_atOs.534.2.S1_x_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 4141 of 4141 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 6.015398.658549.21823
Inflorescence (P2, 3-5 cm) 7.058858.871079.41651
Inflorescence (P3, 5-10 cm) 6.638448.600569.42482
Inflorescence (P4, 10-15 cm) 6.116808.285809.46702
Inflorescence (P5, 15-22 cm) 5.784367.7730910.24541
Inflorescence (P6, 22-30 cm) 5.649488.0662110.26493
Unpollenated stigma at antithesis 7.835947.3815511.09592
Ovary at antithesis 8.055317.4741910.62401
Embryo. 7.592867.405829.73818
Endosperm. 7.630788.123648.04763
Seed (S1, 0-2 days after pollenation) 5.556427.162589.22279
Seed (S2, 3-4 days after pollenation) 5.550377.033109.05072
Seed (S3, 5-10 days after pollenation) 5.421166.121318.22780
Seed (S4, 11-20 days after pollenation) 5.452515.571727.66427
Seed (S5, 21-29 days after pollenation) 5.818587.110227.58814
Dry seed 7.574929.118299.42822
1h seed (aerobic) 7.293139.162999.23168
1h seed (anaerobic) 7.396079.378599.34375
3h seed (aerobic) 7.750258.503179.03683
3h seed (anaerobic) 7.306178.809988.99419
12h seed (aerobic) 8.138189.050838.72563
12h seed (anaerobic) 8.488519.036868.11358
24h (aerobic) 8.210328.890698.72253
24h seed (anaerobic) 8.446169.104248.27632
27h (aerobic) 8.468509.453888.37446
27h (anaerobic) 8.714469.397898.46792
30h (aerobic) 8.393209.439298.23929
30h (anaerobic) 8.544779.395178.19926
27h (24h N + 3h A) 8.770279.419408.68938
27h (24h A + 3h N) 8.077699.815996.48597
30h (24h N + 6h A) 8.494469.474028.21128
30h (24h A + 6h N) 8.070739.912337.15023
Aerobic grown coleoptiles (4 days) 5.628395.583126.16178
Anoxic grown coleoptiles (4 days) 6.709616.595636.14312
10-day old seedling 5.803098.5992911.59890
Leaf from 7-day seedling 6.499508.3658212.62978
Mature leaf 7.067438.0315012.46232
Young Leaf 6.250488.6988811.83954
Semi Apical Meristem 7.255108.305868.91660
Root from 7-day old seedling 6.897748.690738.76048
Root from 7-day Seedling 6.773519.126159.81369