ARC Centre of Excellence for Plant Energy Biology

MPIC — OOP,PRD1,OCT1,OCT1-1,OCT1-2 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT1G67690AT5G65620
Probe Set ID 245190_at247152_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 64 of 7373 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 5.442709.55889
flower, stage 9 5.619579.71819
flower, stage 10/11 5.305769.62767
flower, stage 12 5.004419.97953
flower, stage 12, sepals 3.8505910.29110
flower, stage 12, petals 5.1258610.61930
flower, stage 12, stamens 4.8574710.31520
flower, stage 12, carpels 5.6740710.10060
flower, stage 15 4.1653510.14900
flower, stage 15, pedicels 4.9478010.45320
flower, stage 15, sepals 3.0824010.83870
flower, stage 15, petals 3.8170010.86950
flower, stage 15, stamen 3.0609610.38440
flower, stage 15, carpels 5.3078810.00810
mature pollen 4.1258310.05880
cotyledon 4.4772910.42210
silique, with seeds stage 3; mid globular to early heart embryo 4.781769.99637
silique, wth seeds stage 4; early to late heart embryo 4.6140110.21880
silique, with seeds stage 5; late heart to mid torpedo embryo 4.6772410.07760
seed, stage 6; mid to late torpedo embryos 4.8781310.18670
seed, stage 7; late torpedo to early walking-stick embryo 4.4664910.18740
seed, stage 8; walking-stick to early curled-cotyledons embryo 3.235329.42135
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 4.067759.54138
seed, stage 10; green-cotyledons embryo 3.915289.45732
Germination - Harvested seed, collected before dessication 5.212199.63146
Germination - 0 h dry seed, 15d after collection 5.278369.34107
Germination - 1 h strat 5.398589.93317
Germination - 12 h strat 5.5620210.04250
Germination - 48 h strat 6.9580910.88740
Germination - 1 h SL 6.9615710.89460
Germination - 6 h SL 6.5756210.92620
Germination - 12 h SL 6.4412810.72630
Germination - 24 h SL 6.2848310.37000
Germination - 48 h SL 5.3773110.44910
hypocotyl 4.780499.27066
seedling, green parts 5.6051310.62210
seedling, green parts 4.208509.98597
seedling, green parts 4.281609.91889
seedling, green parts 3.861199.76685
seedling, green parts 3.668269.61386
shoot apex, vegetative + young leaves 5.877289.89171
leaves 1 + 2 5.3216710.38300
shoot apex, vegetative 5.960219.84824
shoot apex, transition (before bolting) 6.313549.80971
shoot apex, inflorescence (after bolting) 6.004529.66456
rosette leaf #4, 1 cm long 5.6227610.28120
rosette leaf # 2 3.8970610.16020
rosette leaf # 4 3.9164110.32060
rosette leaf # 6 4.1839310.50070
rosette leaf # 8 4.7923710.34580
rosette leaf # 10 5.0304410.45600
rosette leaf # 12 5.1758810.23440
leaf 7, petiole 4.5485710.12530
leaf 7, proximal half 4.2888010.54680
leaf 7, distal half 4.3704010.62610
developmental drift, entire rosette after transition to flowering, but before bolting 4.4417910.26880
developmental drift, entire rosette after transition to flowering, but before bolting 4.7245510.32140
developmental drift, entire rosette after transition to flowering, but before bolting 4.6424710.30230
senescing leaf 3.5201010.56990
cauline leaf 3.6771210.74230
vegetative rosette 5.6304910.12990
vegetative rosette 5.654659.90039
vegetative rosette 5.634079.77879
leaf 5.2380410.23160
stem, 2nd internode 3.152099.98925
stem, 1st node 4.318129.76506
root 4.189879.26273
root 4.533059.24931
root 4.334539.26122
root 4.767079.52390
roots 4.633199.40229
root 3.691729.15701
root 3.923859.18390
Rice RNA Transcript Expression  
Locus LOC_Os01g67590.1LOC_Os02g58340.1LOC_Os06g47210.1
Probe Set ID Os.14090.1.S1_a_atOs.7317.1.S1_a_atOs.54309.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 40 of 4141 of 4133 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 7.632158.753994.30140
Inflorescence (P2, 3-5 cm) 7.426319.296623.94776
Inflorescence (P3, 5-10 cm) 6.821459.041073.13247
Inflorescence (P4, 10-15 cm) 6.232888.655102.98129
Inflorescence (P5, 15-22 cm) 6.527128.705793.44151
Inflorescence (P6, 22-30 cm) 5.944648.892222.57718
Unpollenated stigma at antithesis 7.9733910.153835.57186
Ovary at antithesis 8.802929.909336.53356
Embryo. 8.555749.289824.76746
Endosperm. 7.6978410.362483.61979
Seed (S1, 0-2 days after pollenation) 5.198558.061743.30238
Seed (S2, 3-4 days after pollenation) 5.299598.920583.43134
Seed (S3, 5-10 days after pollenation) 5.192118.905732.65142
Seed (S4, 11-20 days after pollenation) 3.933968.192542.59596
Seed (S5, 21-29 days after pollenation) 5.559257.327422.74101
Dry seed 7.239628.827283.88610
1h seed (aerobic) 7.255248.662714.02267
1h seed (anaerobic) 7.280168.648734.16097
3h seed (aerobic) 6.668518.449963.77184
3h seed (anaerobic) 6.959498.152323.17489
12h seed (aerobic) 6.868558.562486.12082
12h seed (anaerobic) 6.713708.398326.20963
24h (aerobic) 6.835268.800165.65166
24h seed (anaerobic) 6.423388.668595.70296
27h (aerobic) 6.851909.360395.76647
27h (anaerobic) 6.766709.090896.19745
30h (aerobic) 6.947179.393965.76169
30h (anaerobic) 6.778308.961086.13347
27h (24h N + 3h A) 7.153769.464556.33903
27h (24h A + 3h N) 7.067919.074175.25198
30h (24h N + 6h A) 7.166279.317596.04251
30h (24h A + 6h N) 6.941229.041845.41987
Aerobic grown coleoptiles (4 days) 4.530007.742792.50750
Anoxic grown coleoptiles (4 days) 5.555616.414412.59679
10-day old seedling 8.3745110.102273.99974
Leaf from 7-day seedling 8.1061110.338694.89898
Mature leaf 5.8223911.111885.20948
Young Leaf 6.1330310.416416.44779
Semi Apical Meristem 8.574179.448656.51173
Root from 7-day old seedling 5.953819.491084.20948
Root from 7-day Seedling 7.127909.515474.47207