MPIC
RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm) | 2 | 7 | 12 | Global expression heatmaps (Excel): Arabidopsis Rice |
| Arabidopsis RNA Transcript Expression | |
|---|---|
| Locus | AT5G09420 |
| Probe Set ID | 245879_at |
| Developmental Expression | Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in | 70 of 73 |
| Stress expression | Control, Drought, Salt, Cold, Heat |
| flower 2 | 6.12082 |
| flower, stage 9 | 6.26689 |
| flower, stage 10/11 | 5.91600 |
| flower, stage 12 | 5.68488 |
| flower, stage 12, sepals | 6.39851 |
| flower, stage 12, petals | 5.21696 |
| flower, stage 12, stamens | 4.70834 |
| flower, stage 12, carpels | 6.52343 |
| flower, stage 15 | 5.55654 |
| flower, stage 15, pedicels | 5.20692 |
| flower, stage 15, sepals | 6.75506 |
| flower, stage 15, petals | 5.32899 |
| flower, stage 15, stamen | 5.25428 |
| flower, stage 15, carpels | 6.01085 |
| mature pollen | 5.95237 |
| cotyledon | 5.58339 |
| silique, with seeds stage 3; mid globular to early heart embryo | 5.10154 |
| silique, wth seeds stage 4; early to late heart embryo | 6.20425 |
| silique, with seeds stage 5; late heart to mid torpedo embryo | 6.11084 |
| seed, stage 6; mid to late torpedo embryos | 5.50956 |
| seed, stage 7; late torpedo to early walking-stick embryo | 5.44084 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo | 5.81849 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo | 6.59308 |
| seed, stage 10; green-cotyledons embryo | 6.52086 |
| Germination - Harvested seed, collected before dessication | 8.59444 |
| Germination - 0 h dry seed, 15d after collection | 8.42875 |
| Germination - 1 h strat | 8.93928 |
| Germination - 12 h strat | 9.16198 |
| Germination - 48 h strat | 9.25847 |
| Germination - 1 h SL | 8.97420 |
| Germination - 6 h SL | 8.38840 |
| Germination - 12 h SL | 7.45722 |
| Germination - 24 h SL | 6.78538 |
| Germination - 48 h SL | 5.80506 |
| hypocotyl | 6.13873 |
| seedling, green parts | 5.93950 |
| seedling, green parts | 6.23030 |
| seedling, green parts | 5.65057 |
| seedling, green parts | 5.66816 |
| seedling, green parts | 5.11791 |
| shoot apex, vegetative + young leaves | 6.40984 |
| leaves 1 + 2 | 5.25088 |
| shoot apex, vegetative | 7.06185 |
| shoot apex, transition (before bolting) | 7.17530 |
| shoot apex, inflorescence (after bolting) | 7.09747 |
| rosette leaf #4, 1 cm long | 6.16066 |
| rosette leaf # 2 | 5.18011 |
| rosette leaf # 4 | 5.94723 |
| rosette leaf # 6 | 5.56137 |
| rosette leaf # 8 | 5.67585 |
| rosette leaf # 10 | 5.40281 |
| rosette leaf # 12 | 5.67059 |
| leaf 7, petiole | 5.51711 |
| leaf 7, proximal half | 5.75243 |
| leaf 7, distal half | 5.72000 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 5.63981 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 5.70738 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 5.73229 |
| senescing leaf | 6.04844 |
| cauline leaf | 5.57271 |
| vegetative rosette | 5.73249 |
| vegetative rosette | 6.18188 |
| vegetative rosette | 6.32615 |
| leaf | 5.19601 |
| stem, 2nd internode | 5.30656 |
| stem, 1st node | 5.60144 |
| root | 6.35085 |
| root | 6.35894 |
| root | 6.62820 |
| root | 6.80368 |
| roots | 6.57090 |
| root | 6.23112 |
| root | 6.08603 |
| Rice RNA Transcript Expression | ||
|---|---|---|
| Locus | LOC_Os02g51810.1 | LOC_Os03g50010.1 |
| Probe Set ID | Os.52928.1.S1_at | Os.20280.1.S1_at |
| Developmental Expression | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower |
| No. of tissues expressed in | 41 of 41 | 41 of 41 |
| Stress expression | Control (D,S,C), Salt, Cold, Control (H), Heat | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat |
| Young inflorescence (P1, upto 3 cm) | 7.82097 | 7.91232 |
| Inflorescence (P2, 3-5 cm) | 7.36377 | 7.97844 |
| Inflorescence (P3, 5-10 cm) | 7.38290 | 7.86040 |
| Inflorescence (P4, 10-15 cm) | 6.61555 | 7.76011 |
| Inflorescence (P5, 15-22 cm) | 6.76745 | 7.94195 |
| Inflorescence (P6, 22-30 cm) | 5.46651 | 7.96330 |
| Unpollenated stigma at antithesis | 7.52120 | 9.60714 |
| Ovary at antithesis | 9.16120 | 9.18785 |
| Embryo. | 7.20945 | 9.11420 |
| Endosperm. | 6.36776 | 10.45739 |
| Seed (S1, 0-2 days after pollenation) | 5.36511 | 7.42858 |
| Seed (S2, 3-4 days after pollenation) | 4.10193 | 8.00781 |
| Seed (S3, 5-10 days after pollenation) | 3.68327 | 7.72454 |
| Seed (S4, 11-20 days after pollenation) | 4.11032 | 8.02502 |
| Seed (S5, 21-29 days after pollenation) | 5.71220 | 8.42987 |
| Dry seed | 8.03087 | 9.72048 |
| 1h seed (aerobic) | 7.64666 | 9.38557 |
| 1h seed (anaerobic) | 8.02948 | 9.75164 |
| 3h seed (aerobic) | 6.79324 | 9.11994 |
| 3h seed (anaerobic) | 7.24284 | 9.14673 |
| 12h seed (aerobic) | 6.30930 | 9.14162 |
| 12h seed (anaerobic) | 6.30867 | 9.46482 |
| 24h (aerobic) | 5.77774 | 8.88920 |
| 24h seed (anaerobic) | 6.19514 | 9.27679 |
| 27h (aerobic) | 5.80838 | 8.92423 |
| 27h (anaerobic) | 6.62815 | 9.20254 |
| 30h (aerobic) | 5.67621 | 8.92177 |
| 30h (anaerobic) | 6.42436 | 9.26027 |
| 27h (24h N + 3h A) | 6.43517 | 8.96709 |
| 27h (24h A + 3h N) | 5.86722 | 9.52741 |
| 30h (24h N + 6h A) | 6.13073 | 8.87074 |
| 30h (24h A + 6h N) | 5.99659 | 9.51743 |
| Aerobic grown coleoptiles (4 days) | 2.38298 | 7.71814 |
| Anoxic grown coleoptiles (4 days) | 3.47517 | 8.20421 |
| 10-day old seedling | 5.30470 | 10.10379 |
| Leaf from 7-day seedling | 5.06864 | 9.72113 |
| Mature leaf | 2.84661 | 8.04359 |
| Young Leaf | 3.63256 | 8.44209 |
| Semi Apical Meristem | 8.22425 | 7.74337 |
| Root from 7-day old seedling | 3.49126 | 7.78231 |
| Root from 7-day Seedling | 5.13373 | 9.75603 |