ARC Centre of Excellence for Plant Energy Biology

MPIC — MPP-ALPHA1,MPP-ALPHA2,MPP-BETA,MAS1,MAS2 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT3G16480AT1G51980AT3G02090
Probe Set ID 259326_at265056_at258862_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 73 of 7373 of 7373 of 73
Stress expression Control, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, HeatControl, Drought, Salt, Cold, Heat
flower 2 9.2202910.7178011.17550
flower, stage 9 9.2956810.6964011.29430
flower, stage 10/11 8.8512010.4894011.16940
flower, stage 12 9.0944410.9758011.61180
flower, stage 12, sepals 8.9487811.4655011.99180
flower, stage 12, petals 9.1231611.4167011.72390
flower, stage 12, stamens 9.7597012.0837012.29770
flower, stage 12, carpels 9.1389310.8720011.41590
flower, stage 15 8.3685811.0440011.60450
flower, stage 15, pedicels 8.7113711.0288011.72190
flower, stage 15, sepals 8.5520711.8704012.53870
flower, stage 15, petals 8.1184311.6426012.11210
flower, stage 15, stamen 7.4939511.2885011.82430
flower, stage 15, carpels 8.9870010.9060011.43940
mature pollen 9.3248811.6366011.22960
cotyledon 8.5623710.9381011.79320
silique, with seeds stage 3; mid globular to early heart embryo 8.6419610.1319010.88320
silique, wth seeds stage 4; early to late heart embryo 8.4510210.0718010.95020
silique, with seeds stage 5; late heart to mid torpedo embryo 8.386359.9924510.83790
seed, stage 6; mid to late torpedo embryos 8.572329.7775410.36580
seed, stage 7; late torpedo to early walking-stick embryo 8.623529.7059810.29940
seed, stage 8; walking-stick to early curled-cotyledons embryo 8.334549.7026310.32880
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 7.923889.9776910.77200
seed, stage 10; green-cotyledons embryo 8.2509110.2020010.78650
Germination - Harvested seed, collected before dessication 8.5309611.7543011.99080
Germination - 0 h dry seed, 15d after collection 8.4526011.6721012.00770
Germination - 1 h strat 8.9222711.8427012.24870
Germination - 12 h strat 8.6519312.0032012.23750
Germination - 48 h strat 10.1268012.8622012.80600
Germination - 1 h SL 10.3929012.8337012.78770
Germination - 6 h SL 11.0874012.4226012.78380
Germination - 12 h SL 11.1539012.4861012.79940
Germination - 24 h SL 10.9916012.5546012.70960
Germination - 48 h SL 10.3331012.6033012.81410
hypocotyl 8.6352810.8451011.76580
seedling, green parts 9.5349111.4845011.97490
seedling, green parts 8.3298410.4592011.22890
seedling, green parts 8.4921610.7246011.42900
seedling, green parts 8.3068210.2142011.03640
seedling, green parts 8.2022810.3843011.04350
shoot apex, vegetative + young leaves 9.6383511.0884011.51950
leaves 1 + 2 9.3391911.0235011.62770
shoot apex, vegetative 9.7404111.1763011.76950
shoot apex, transition (before bolting) 9.7287410.7671011.57530
shoot apex, inflorescence (after bolting) 9.4136510.7280011.43680
rosette leaf #4, 1 cm long 9.5349111.2514011.67880
rosette leaf # 2 8.2281710.6132011.46750
rosette leaf # 4 8.2253810.7105011.48150
rosette leaf # 6 8.4551510.8660011.63690
rosette leaf # 8 8.6946110.9307011.61600
rosette leaf # 10 8.8783311.0285011.70360
rosette leaf # 12 9.1770610.9640011.50840
leaf 7, petiole 8.6356711.0081011.79420
leaf 7, proximal half 8.6329710.9334011.69030
leaf 7, distal half 8.4216010.6639011.60840
developmental drift, entire rosette after transition to flowering, but before bolting 8.6554910.8599011.50140
developmental drift, entire rosette after transition to flowering, but before bolting 8.7468411.0257011.60990
developmental drift, entire rosette after transition to flowering, but before bolting 8.5079610.9786011.49860
senescing leaf 8.3319811.6702012.05720
cauline leaf 8.0432211.0925011.42030
vegetative rosette 9.1251710.9219011.45450
vegetative rosette 9.2339211.0228011.42600
vegetative rosette 9.4076711.1032011.50790
leaf 8.7792710.7276011.24060
stem, 2nd internode 7.8906710.7749011.55600
stem, 1st node 8.2205010.9376011.72050
root 8.9629811.8780012.38910
root 8.5342611.6462012.34470
root 8.6246411.6734012.33970
root 9.3181211.4495012.02510
roots 9.1916611.3534011.94450
root 8.3262111.2010011.86620
root 8.4358311.4289012.12440
Rice RNA Transcript Expression  
Locus LOC_Os01g09560.1LOC_Os01g51390.1LOC_Os01g53700.1LOC_Os01g73550.1LOC_Os03g11410.1LOC_Os05g44916.1
Probe Set ID Os.5825.1.S1_a_atOs.4124.1.S1_a_atOs.12235.1.S1_atOs.12130.1.S1_atOs.10891.1.S1_atOs.8162.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerNot expressedSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 4141 of 4141 of 4141 of 410 of 4139 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 10.508769.500899.759717.794862.982556.07207
Inflorescence (P2, 3-5 cm) 10.579739.8063810.186017.020583.093955.98918
Inflorescence (P3, 5-10 cm) 10.604129.223689.892816.827332.912596.53483
Inflorescence (P4, 10-15 cm) 10.812558.757329.691687.112922.898425.67145
Inflorescence (P5, 15-22 cm) 10.926327.781169.733937.507332.888855.43609
Inflorescence (P6, 22-30 cm) 10.665298.458659.669396.877932.899815.91181
Unpollenated stigma at antithesis 10.840619.8362910.916168.858913.026617.28190
Ovary at antithesis 10.8293010.3555611.006419.450022.846027.30481
Embryo. 10.283179.2402910.386598.283423.209156.85049
Endosperm. 10.9997110.1476010.763378.128853.594026.09317
Seed (S1, 0-2 days after pollenation) 10.555288.048358.849717.464362.955064.68803
Seed (S2, 3-4 days after pollenation) 10.407168.123149.060196.689042.877925.96528
Seed (S3, 5-10 days after pollenation) 9.833648.038538.899675.144742.866056.51571
Seed (S4, 11-20 days after pollenation) 9.022387.497738.302836.281013.151635.39951
Seed (S5, 21-29 days after pollenation) 8.258168.053678.578457.793393.003075.18223
Dry seed 7.4514710.017098.719399.528393.047167.65255
1h seed (aerobic) 7.257439.815038.620419.322513.032907.37670
1h seed (anaerobic) 7.255539.930528.766779.599093.001467.74571
3h seed (aerobic) 7.804389.806338.321298.581232.984807.66747
3h seed (anaerobic) 7.003369.703828.343209.019872.956237.51327
12h seed (aerobic) 10.423769.6445710.051778.882713.021778.29005
12h seed (anaerobic) 10.0729410.368179.808758.667823.032277.96031
24h (aerobic) 10.932999.0787410.280578.509263.018667.86517
24h seed (anaerobic) 10.2488810.581059.556258.034253.035627.54870
27h (aerobic) 11.139199.5051010.439719.030373.324008.12645
27h (anaerobic) 10.5955810.6915110.040258.489113.238527.82281
30h (aerobic) 11.136439.6311610.455208.868633.210477.99664
30h (anaerobic) 10.6021910.691289.980308.401513.170657.81299
27h (24h N + 3h A) 10.563619.8293710.084799.213493.120107.98810
27h (24h A + 3h N) 11.3030110.1784810.536428.462713.409188.04036
30h (24h N + 6h A) 10.677909.6787310.291059.023093.156197.96193
30h (24h A + 6h N) 11.2165810.3912710.273188.295903.309117.72637
Aerobic grown coleoptiles (4 days) 9.954415.922568.222364.531223.123305.62478
Anoxic grown coleoptiles (4 days) 9.913159.091988.081094.898733.126385.40176
10-day old seedling 10.246379.769759.670657.254273.103166.78676
Leaf from 7-day seedling 10.289679.6226210.327888.314443.051646.94008
Mature leaf 9.925719.916718.802527.771052.938854.23948
Young Leaf 9.980719.988129.457528.210982.963214.51851
Semi Apical Meristem 10.565089.7147710.615538.721162.891916.36342
Root from 7-day old seedling 11.522807.8682910.472687.255012.934234.51000
Root from 7-day Seedling 11.170859.1971511.018748.808403.158386.93390