MPIC
RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm) | 2 | 7 | 12 | Global expression heatmaps (Excel): Arabidopsis Rice |
| Arabidopsis RNA Transcript Expression | |
|---|---|
| Locus | AT5G17710 |
| Probe Set ID | 250061_at |
| Developmental Expression | Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in | 72 of 73 |
| Stress expression | Control, Drought, Salt, Cold, Heat |
| flower 2 | 8.94891 |
| flower, stage 9 | 8.82258 |
| flower, stage 10/11 | 8.96570 |
| flower, stage 12 | 8.83512 |
| flower, stage 12, sepals | 9.65876 |
| flower, stage 12, petals | 8.76759 |
| flower, stage 12, stamens | 7.72662 |
| flower, stage 12, carpels | 8.66201 |
| flower, stage 15 | 8.27817 |
| flower, stage 15, pedicels | 10.09560 |
| flower, stage 15, sepals | 8.36603 |
| flower, stage 15, petals | 7.89212 |
| flower, stage 15, stamen | 7.41455 |
| flower, stage 15, carpels | 9.02110 |
| mature pollen | 6.39904 |
| cotyledon | 10.01410 |
| silique, with seeds stage 3; mid globular to early heart embryo | 9.23529 |
| silique, wth seeds stage 4; early to late heart embryo | 8.59297 |
| silique, with seeds stage 5; late heart to mid torpedo embryo | 8.45538 |
| seed, stage 6; mid to late torpedo embryos | 7.99340 |
| seed, stage 7; late torpedo to early walking-stick embryo | 7.78286 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo | 8.39780 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo | 8.52746 |
| seed, stage 10; green-cotyledons embryo | 8.78160 |
| Germination - Harvested seed, collected before dessication | 11.91030 |
| Germination - 0 h dry seed, 15d after collection | 11.75250 |
| Germination - 1 h strat | 11.68150 |
| Germination - 12 h strat | 11.72000 |
| Germination - 48 h strat | 11.70940 |
| Germination - 1 h SL | 11.71120 |
| Germination - 6 h SL | 12.09990 |
| Germination - 12 h SL | 12.40320 |
| Germination - 24 h SL | 11.88730 |
| Germination - 48 h SL | 11.42490 |
| hypocotyl | 8.57293 |
| seedling, green parts | 11.06990 |
| seedling, green parts | 9.95153 |
| seedling, green parts | 9.90071 |
| seedling, green parts | 9.81685 |
| seedling, green parts | 9.75117 |
| shoot apex, vegetative + young leaves | 10.47750 |
| leaves 1 + 2 | 11.17810 |
| shoot apex, vegetative | 9.84673 |
| shoot apex, transition (before bolting) | 8.98370 |
| shoot apex, inflorescence (after bolting) | 8.59774 |
| rosette leaf #4, 1 cm long | 11.19880 |
| rosette leaf # 2 | 9.42211 |
| rosette leaf # 4 | 9.57995 |
| rosette leaf # 6 | 9.78622 |
| rosette leaf # 8 | 10.32350 |
| rosette leaf # 10 | 10.51670 |
| rosette leaf # 12 | 10.79540 |
| leaf 7, petiole | 10.20240 |
| leaf 7, proximal half | 10.47340 |
| leaf 7, distal half | 10.14630 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 10.01980 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 9.98577 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 9.89752 |
| senescing leaf | 8.13919 |
| cauline leaf | 9.16543 |
| vegetative rosette | 10.52220 |
| vegetative rosette | 10.87110 |
| vegetative rosette | 10.59250 |
| leaf | 10.54170 |
| stem, 2nd internode | 8.22059 |
| stem, 1st node | 7.81411 |
| root | 8.05643 |
| root | 8.23293 |
| root | 8.00649 |
| root | 8.31336 |
| roots | 8.45729 |
| root | 8.31865 |
| root | 8.15808 |
| Rice RNA Transcript Expression | ||
|---|---|---|
| Locus | LOC_Os02g39870.1 | LOC_Os04g35180.1 |
| Probe Set ID | OsAffx.24653.1.S1_at | Os.54106.1.S1_at |
| Developmental Expression | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower |
| No. of tissues expressed in | 41 of 41 | 41 of 41 |
| Stress expression | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat |
| Young inflorescence (P1, upto 3 cm) | 9.24471 | 7.62531 |
| Inflorescence (P2, 3-5 cm) | 8.90279 | 8.21852 |
| Inflorescence (P3, 5-10 cm) | 9.41958 | 8.19780 |
| Inflorescence (P4, 10-15 cm) | 8.72658 | 8.07238 |
| Inflorescence (P5, 15-22 cm) | 8.96260 | 9.01384 |
| Inflorescence (P6, 22-30 cm) | 9.60237 | 9.07830 |
| Unpollenated stigma at antithesis | 10.38921 | 10.30656 |
| Ovary at antithesis | 9.33469 | 8.68474 |
| Embryo. | 8.08831 | 8.86770 |
| Endosperm. | 10.40853 | 10.81023 |
| Seed (S1, 0-2 days after pollenation) | 8.43159 | 8.90405 |
| Seed (S2, 3-4 days after pollenation) | 8.89045 | 9.23307 |
| Seed (S3, 5-10 days after pollenation) | 8.69089 | 8.71659 |
| Seed (S4, 11-20 days after pollenation) | 7.82271 | 8.06004 |
| Seed (S5, 21-29 days after pollenation) | 7.44918 | 7.57471 |
| Dry seed | 8.89933 | 7.72421 |
| 1h seed (aerobic) | 8.97462 | 7.76950 |
| 1h seed (anaerobic) | 8.90261 | 7.99307 |
| 3h seed (aerobic) | 9.50665 | 8.41845 |
| 3h seed (anaerobic) | 9.22151 | 8.07368 |
| 12h seed (aerobic) | 8.81174 | 9.03062 |
| 12h seed (anaerobic) | 8.92117 | 8.58923 |
| 24h (aerobic) | 8.87300 | 9.47550 |
| 24h seed (anaerobic) | 8.70427 | 8.72229 |
| 27h (aerobic) | 8.61099 | 9.40147 |
| 27h (anaerobic) | 8.50626 | 8.85928 |
| 30h (aerobic) | 8.59390 | 9.39845 |
| 30h (anaerobic) | 8.63232 | 8.77792 |
| 27h (24h N + 3h A) | 8.87160 | 9.25171 |
| 27h (24h A + 3h N) | 8.33339 | 8.74576 |
| 30h (24h N + 6h A) | 8.57932 | 9.33284 |
| 30h (24h A + 6h N) | 8.58899 | 8.79622 |
| Aerobic grown coleoptiles (4 days) | 6.34094 | 7.05909 |
| Anoxic grown coleoptiles (4 days) | 7.09847 | 6.56178 |
| 10-day old seedling | 9.13749 | 9.79565 |
| Leaf from 7-day seedling | 9.68574 | 10.38686 |
| Mature leaf | 10.27361 | 10.62866 |
| Young Leaf | 9.26021 | 8.98990 |
| Semi Apical Meristem | 8.28907 | 7.70041 |
| Root from 7-day old seedling | 8.90698 | 8.83899 |
| Root from 7-day Seedling | 8.56937 | 8.80938 |