MPIC
RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm) | 2 | 7 | 12 | Global expression heatmaps (Excel): Arabidopsis Rice |
| Arabidopsis RNA Transcript Expression | |
|---|---|
| Locus | AT2G15900 |
| Probe Set ID | 265535_at |
| Developmental Expression | Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in | 65 of 73 |
| Stress expression | Control, Drought, Salt, Cold, Heat |
| flower 2 | 5.66387 |
| flower, stage 9 | 6.50612 |
| flower, stage 10/11 | 6.59105 |
| flower, stage 12 | 7.07153 |
| flower, stage 12, sepals | 6.78405 |
| flower, stage 12, petals | 7.32314 |
| flower, stage 12, stamens | 7.69449 |
| flower, stage 12, carpels | 7.64660 |
| flower, stage 15 | 7.77247 |
| flower, stage 15, pedicels | 6.46406 |
| flower, stage 15, sepals | 6.35705 |
| flower, stage 15, petals | 6.58379 |
| flower, stage 15, stamen | 6.07044 |
| flower, stage 15, carpels | 5.76919 |
| mature pollen | 5.89680 |
| cotyledon | 5.62634 |
| silique, with seeds stage 3; mid globular to early heart embryo | 5.47192 |
| silique, wth seeds stage 4; early to late heart embryo | 4.99343 |
| silique, with seeds stage 5; late heart to mid torpedo embryo | 4.64419 |
| seed, stage 6; mid to late torpedo embryos | 6.58360 |
| seed, stage 7; late torpedo to early walking-stick embryo | 6.87451 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo | 7.31295 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo | 6.81127 |
| seed, stage 10; green-cotyledons embryo | 7.32816 |
| Germination - Harvested seed, collected before dessication | 7.27447 |
| Germination - 0 h dry seed, 15d after collection | 6.39318 |
| Germination - 1 h strat | 6.68552 |
| Germination - 12 h strat | 6.31067 |
| Germination - 48 h strat | 6.64576 |
| Germination - 1 h SL | 6.77781 |
| Germination - 6 h SL | 6.67176 |
| Germination - 12 h SL | 7.20839 |
| Germination - 24 h SL | 7.02009 |
| Germination - 48 h SL | 6.97260 |
| hypocotyl | 6.93267 |
| seedling, green parts | 6.50864 |
| seedling, green parts | 6.54343 |
| seedling, green parts | 6.70092 |
| seedling, green parts | 6.75517 |
| seedling, green parts | 6.92403 |
| shoot apex, vegetative + young leaves | 6.66077 |
| leaves 1 + 2 | 6.77063 |
| shoot apex, vegetative | 6.93209 |
| shoot apex, transition (before bolting) | 8.28360 |
| shoot apex, inflorescence (after bolting) | 7.48779 |
| rosette leaf #4, 1 cm long | 6.75569 |
| rosette leaf # 2 | 6.42672 |
| rosette leaf # 4 | 6.42296 |
| rosette leaf # 6 | 7.26250 |
| rosette leaf # 8 | 7.79541 |
| rosette leaf # 10 | 7.25861 |
| rosette leaf # 12 | 6.84566 |
| leaf 7, petiole | 6.86488 |
| leaf 7, proximal half | 6.78954 |
| leaf 7, distal half | 6.76203 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 7.43664 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 7.54007 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 7.04327 |
| senescing leaf | 7.06666 |
| cauline leaf | 6.90175 |
| vegetative rosette | 7.33093 |
| vegetative rosette | 7.79570 |
| vegetative rosette | 7.43947 |
| leaf | 6.92314 |
| stem, 2nd internode | 8.62359 |
| stem, 1st node | 6.54850 |
| root | 6.55578 |
| root | 7.27349 |
| root | 6.95352 |
| root | 6.56376 |
| roots | 6.85133 |
| root | 7.35744 |
| root | 7.28440 |
| Rice RNA Transcript Expression | ||
|---|---|---|
| Locus | LOC_Os05g50660.1 | LOC_Os11g06040.1 |
| Probe Set ID | Os.48043.1.S2_at | Os.35800.1.S1_at |
| Developmental Expression | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower |
| No. of tissues expressed in | 41 of 41 | 41 of 41 |
| Stress expression | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat |
| Young inflorescence (P1, upto 3 cm) | 8.59501 | 9.07088 |
| Inflorescence (P2, 3-5 cm) | 8.07196 | 9.00921 |
| Inflorescence (P3, 5-10 cm) | 8.55466 | 8.52695 |
| Inflorescence (P4, 10-15 cm) | 8.02571 | 8.11778 |
| Inflorescence (P5, 15-22 cm) | 8.12532 | 8.09236 |
| Inflorescence (P6, 22-30 cm) | 7.80070 | 8.34074 |
| Unpollenated stigma at antithesis | 8.79017 | 8.47752 |
| Ovary at antithesis | 8.93946 | 8.41442 |
| Embryo. | 7.00877 | 8.04900 |
| Endosperm. | 7.46547 | 6.59731 |
| Seed (S1, 0-2 days after pollenation) | 7.08695 | 7.58353 |
| Seed (S2, 3-4 days after pollenation) | 6.90870 | 7.17552 |
| Seed (S3, 5-10 days after pollenation) | 7.54550 | 7.27172 |
| Seed (S4, 11-20 days after pollenation) | 7.20855 | 7.51440 |
| Seed (S5, 21-29 days after pollenation) | 7.61905 | 7.84590 |
| Dry seed | 8.30560 | 7.08412 |
| 1h seed (aerobic) | 7.99980 | 6.94429 |
| 1h seed (anaerobic) | 8.06218 | 7.08706 |
| 3h seed (aerobic) | 7.40789 | 7.59886 |
| 3h seed (anaerobic) | 7.40566 | 6.87511 |
| 12h seed (aerobic) | 6.46181 | 7.04795 |
| 12h seed (anaerobic) | 6.33895 | 7.35382 |
| 24h (aerobic) | 5.96424 | 7.12416 |
| 24h seed (anaerobic) | 6.33006 | 7.20859 |
| 27h (aerobic) | 5.90974 | 6.93238 |
| 27h (anaerobic) | 6.94282 | 7.29030 |
| 30h (aerobic) | 6.27250 | 6.98502 |
| 30h (anaerobic) | 6.93635 | 7.35979 |
| 27h (24h N + 3h A) | 6.81852 | 6.89362 |
| 27h (24h A + 3h N) | 6.21445 | 6.96256 |
| 30h (24h N + 6h A) | 6.89957 | 7.04563 |
| 30h (24h A + 6h N) | 6.08440 | 7.02349 |
| Aerobic grown coleoptiles (4 days) | 4.27067 | 5.56640 |
| Anoxic grown coleoptiles (4 days) | 4.31130 | 5.55046 |
| 10-day old seedling | 7.87838 | 9.03743 |
| Leaf from 7-day seedling | 8.09013 | 8.18942 |
| Mature leaf | 8.57305 | 8.62736 |
| Young Leaf | 8.98514 | 9.85950 |
| Semi Apical Meristem | 8.60324 | 7.87218 |
| Root from 7-day old seedling | 7.12979 | 8.11549 |
| Root from 7-day Seedling | 7.54364 | 8.51979 |