MPIC - IMP1,IMP2 RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Arabidopsis RNA Transcript Expression
Locus	AT3G08980
Probe Set ID	259199_at
Developmental Expression	Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in	53 of 73
Stress expression	Control, Drought, Salt, Cold, Heat
flower 2	6.85638
flower, stage 9	6.75002
flower, stage 10/11	6.65857
flower, stage 12	6.55322
flower, stage 12, sepals	7.08169
flower, stage 12, petals	6.87141
flower, stage 12, stamens	6.52453
flower, stage 12, carpels	6.90222
flower, stage 15	6.47233
flower, stage 15, pedicels	6.67018
flower, stage 15, sepals	6.35279
flower, stage 15, petals	5.83918
flower, stage 15, stamen	5.91234
flower, stage 15, carpels	6.90958
mature pollen	7.82301
cotyledon	6.65150
silique, with seeds stage 3; mid globular to early heart embryo	6.44267
silique, wth seeds stage 4; early to late heart embryo	6.04127
silique, with seeds stage 5; late heart to mid torpedo embryo	6.11908
seed, stage 6; mid to late torpedo embryos	6.54412
seed, stage 7; late torpedo to early walking-stick embryo	6.19982
seed, stage 8; walking-stick to early curled-cotyledons embryo	6.16474
seed, stage 9; curled-cotyledons to early green-cotyledons embryo	6.76087
seed, stage 10; green-cotyledons embryo	6.64114
Germination - Harvested seed, collected before dessication	7.30811
Germination - 0 h dry seed, 15d after collection	7.12724
Germination - 1 h strat	8.06950
Germination - 12 h strat	7.68782
Germination - 48 h strat	9.03918
Germination - 1 h SL	9.57757
Germination - 6 h SL	8.71740
Germination - 12 h SL	8.81469
Germination - 24 h SL	8.19917
Germination - 48 h SL	7.35910
hypocotyl	7.05010
seedling, green parts	7.30461
seedling, green parts	6.38200
seedling, green parts	6.75097
seedling, green parts	6.57633
seedling, green parts	6.46342
shoot apex, vegetative + young leaves	7.52726
leaves 1 + 2	7.01160
shoot apex, vegetative	7.67485
shoot apex, transition (before bolting)	7.34782
shoot apex, inflorescence (after bolting)	7.14037
rosette leaf #4, 1 cm long	7.73016
rosette leaf # 2	6.50926
rosette leaf # 4	6.57630
rosette leaf # 6	6.56064
rosette leaf # 8	6.92502
rosette leaf # 10	6.93545
rosette leaf # 12	7.29578
leaf 7, petiole	6.86811
leaf 7, proximal half	6.81354
leaf 7, distal half	6.51545
developmental drift, entire rosette after transition to flowering, but before bolting	6.86400
developmental drift, entire rosette after transition to flowering, but before bolting	6.83299
developmental drift, entire rosette after transition to flowering, but before bolting	6.97800
senescing leaf	6.61344
cauline leaf	6.40638
vegetative rosette	6.96257
vegetative rosette	7.29269
vegetative rosette	7.57512
leaf	6.70386
stem, 2nd internode	6.14909
stem, 1st node	6.60174
root	7.52593
root	6.87580
root	6.96429
root	7.79724
roots	7.49207
root	6.54936
root	6.61316

Rice RNA Transcript Expression
Locus	LOC_Os02g16709.1	LOC_Os03g05430.1	LOC_Os03g55640.1	LOC_Os04g08340.1	LOC_Os09g28000.1	LOC_Os11g40500.1
Probe Set ID	Os.46219.1.S1_at	OsAffx.24979.1.S1_at	Os.17562.1.S1_at	Os.51302.1.A1_at	Os.27824.1.S1_at	Os.13577.1.S1_at
Developmental Expression	Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower	Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower	Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower	Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower	Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower	Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in	41 of 41	32 of 41	38 of 41	38 of 41	41 of 41	41 of 41
Stress expression	Control (D,S,C), Drought, Salt, Cold, Control (H), Heat	Control (D,S,C), Drought, Cold, Control (H), Heat	Control (D,S,C), Drought, Salt, Cold, Control (H), Heat	Control (D,S,C), Drought, Salt, Cold, Control (H), Heat	Control (D,S,C), Drought, Salt, Cold, Control (H), Heat	Control (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm)	7.79426	3.38180	8.15038	6.03917	9.15558	8.03642
Inflorescence (P2, 3-5 cm)	7.72949	3.64922	7.84329	5.36926	7.99701	7.65188
Inflorescence (P3, 5-10 cm)	7.43788	3.51872	7.75781	5.72383	8.98178	7.80349
Inflorescence (P4, 10-15 cm)	7.30535	3.28576	7.97556	5.15333	9.32120	7.75902
Inflorescence (P5, 15-22 cm)	8.67929	3.30297	7.97233	5.32009	7.48326	7.20172
Inflorescence (P6, 22-30 cm)	6.73630	3.17688	7.77229	4.67121	10.19415	7.72538
Unpollenated stigma at antithesis	8.25127	4.93174	12.47016	5.62135	7.40274	7.45193
Ovary at antithesis	8.33609	4.94806	9.42665	6.33616	7.42376	7.29535
Embryo.	7.63967	4.09320	7.61748	8.71608	8.17982	9.43697
Endosperm.	7.82894	5.97086	8.54050	7.74484	8.22920	7.61569
Seed (S1, 0-2 days after pollenation)	6.19542	4.36521	7.07848	5.05486	9.60913	6.60384
Seed (S2, 3-4 days after pollenation)	6.22221	4.36414	7.05525	4.79006	8.67619	6.23227
Seed (S3, 5-10 days after pollenation)	5.75119	4.40773	6.70139	4.15264	7.45451	5.83759
Seed (S4, 11-20 days after pollenation)	5.29911	4.63095	6.84611	3.66487	7.11650	5.56147
Seed (S5, 21-29 days after pollenation)	5.00717	4.48406	7.19429	4.78415	6.71412	6.52488
Dry seed	6.34883	5.74480	7.97385	5.52162	7.55256	8.30189
1h seed (aerobic)	6.31184	5.67484	7.97316	5.32738	8.97016	8.28494
1h seed (anaerobic)	6.33480	5.66942	7.87387	5.40747	7.74652	8.48993
3h seed (aerobic)	6.01651	6.14462	7.98288	6.09152	8.74042	8.19691
3h seed (anaerobic)	6.10190	5.68649	7.99680	5.63653	9.31070	8.16203
12h seed (aerobic)	6.65026	6.14160	7.84001	5.94397	8.38023	9.00223
12h seed (anaerobic)	7.02630	5.89096	6.07248	6.46130	6.03350	9.20816
24h (aerobic)	7.03425	5.65512	6.61748	5.60041	8.49152	8.74341
24h seed (anaerobic)	7.24639	5.59867	3.94170	5.71494	6.57710	9.20491
27h (aerobic)	7.37741	6.27988	6.16823	5.95804	8.20965	8.86871
27h (anaerobic)	7.51460	5.88932	3.69200	6.14224	7.04324	9.14378
30h (aerobic)	7.41544	6.20680	6.35836	6.05920	8.44360	8.91417
30h (anaerobic)	7.43144	5.96101	3.55236	6.28082	7.07938	9.22374
27h (24h N + 3h A)	7.47303	6.52488	7.27463	6.72804	8.95736	9.26241
27h (24h A + 3h N)	6.89044	5.94993	2.16909	5.88069	6.25500	8.43022
30h (24h N + 6h A)	7.30353	6.29421	6.61601	6.31267	8.70638	9.11601
30h (24h A + 6h N)	7.42083	5.93483	2.18745	5.88026	6.37088	8.56202
Aerobic grown coleoptiles (4 days)	2.69050	3.94353	6.65272	2.66832	9.37659	5.38983
Anoxic grown coleoptiles (4 days)	3.74739	3.87825	3.39675	2.99427	7.04823	5.62766
10-day old seedling	8.40232	3.89838	9.07396	6.63219	9.35947	7.54202
Leaf from 7-day seedling	9.19971	3.72214	9.25481	6.50118	9.44075	7.50050
Mature leaf	7.76309	6.19171	8.97055	6.00370	11.67702	8.19238
Young Leaf	8.15086	5.90399	8.84057	4.43596	11.29261	7.01505
Semi Apical Meristem	8.99462	6.41376	8.26241	7.08378	7.33046	9.44138
Root from 7-day old seedling	7.09615	6.16807	8.34297	5.78036	10.51841	8.74446
Root from 7-day Seedling	7.73461	4.44714	8.99779	6.89367	10.38332	8.68338

ARC Centre of Excellence for Plant Energy Biology

MPIC — IMP1,IMP2 RNA Expression