ARC Centre of Excellence for Plant Energy Biology

MPIC — ICP55,ICP55A,ICP55B RNA Expression

RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).

Heatmap scale (natural logarithm) 2 7 12 Global expression heatmaps (Excel): Arabidopsis Rice
Arabidopsis RNA Transcript Expression  
Locus AT1G09300AT4G29490
Probe Set ID 263707_at253704_at
Developmental Expression Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, RootSilique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root
No. of tissues expressed in 51 of 7373 of 73
Stress expression Control, Drought, ColdControl, Drought, Salt, Cold, Heat
flower 2 5.622028.73007
flower, stage 9 5.983479.05504
flower, stage 10/11 5.739778.88938
flower, stage 12 5.744108.98738
flower, stage 12, sepals 6.435389.34848
flower, stage 12, petals 6.286929.38811
flower, stage 12, stamens 5.088949.93099
flower, stage 12, carpels 6.213169.03893
flower, stage 15 5.864519.46808
flower, stage 15, pedicels 4.951038.73645
flower, stage 15, sepals 7.0549310.38660
flower, stage 15, petals 6.3184410.49190
flower, stage 15, stamen 5.2479810.23480
flower, stage 15, carpels 5.899459.01801
mature pollen 3.550928.74109
cotyledon 5.531979.15517
silique, with seeds stage 3; mid globular to early heart embryo 4.964718.56511
silique, wth seeds stage 4; early to late heart embryo 5.200768.91401
silique, with seeds stage 5; late heart to mid torpedo embryo 4.944608.84648
seed, stage 6; mid to late torpedo embryos 4.813518.57310
seed, stage 7; late torpedo to early walking-stick embryo 4.768058.94410
seed, stage 8; walking-stick to early curled-cotyledons embryo 5.099459.51879
seed, stage 9; curled-cotyledons to early green-cotyledons embryo 5.839329.92451
seed, stage 10; green-cotyledons embryo 5.683539.98136
Germination - Harvested seed, collected before dessication 9.1812212.33540
Germination - 0 h dry seed, 15d after collection 9.2329412.36330
Germination - 1 h strat 9.2419012.33590
Germination - 12 h strat 9.1873812.26150
Germination - 48 h strat 9.7585911.01870
Germination - 1 h SL 9.7420010.71350
Germination - 6 h SL 9.2664510.26940
Germination - 12 h SL 8.687839.73512
Germination - 24 h SL 8.318409.28844
Germination - 48 h SL 6.929509.20081
hypocotyl 5.986618.90033
seedling, green parts 6.085208.87036
seedling, green parts 5.267278.58392
seedling, green parts 5.606078.64244
seedling, green parts 5.637418.76530
seedling, green parts 5.119519.01728
shoot apex, vegetative + young leaves 6.067528.53361
leaves 1 + 2 5.365388.83633
shoot apex, vegetative 6.243968.70012
shoot apex, transition (before bolting) 6.233588.99875
shoot apex, inflorescence (after bolting) 6.300098.87889
rosette leaf #4, 1 cm long 5.760518.66985
rosette leaf # 2 5.449769.45710
rosette leaf # 4 5.283469.04399
rosette leaf # 6 5.471938.94720
rosette leaf # 8 5.351798.71198
rosette leaf # 10 5.397918.63254
rosette leaf # 12 5.518488.59277
leaf 7, petiole 5.557678.78669
leaf 7, proximal half 4.777378.90380
leaf 7, distal half 5.133628.99885
developmental drift, entire rosette after transition to flowering, but before bolting 5.263518.86999
developmental drift, entire rosette after transition to flowering, but before bolting 5.276748.91306
developmental drift, entire rosette after transition to flowering, but before bolting 5.410678.94981
senescing leaf 6.3443610.31130
cauline leaf 5.170789.50193
vegetative rosette 5.569108.60515
vegetative rosette 6.150998.62211
vegetative rosette 6.344598.58731
leaf 4.951098.76077
stem, 2nd internode 5.053139.10682
stem, 1st node 5.524218.88300
root 6.251439.10275
root 6.576559.33130
root 6.664709.27897
root 6.284669.05345
roots 5.930539.09140
root 6.624409.18094
root 6.335199.28623
Rice RNA Transcript Expression  
Locus LOC_Os02g13140.1LOC_Os12g37640.1
Probe Set ID Os.27534.1.A1_atOs.10856.1.S1_at
Developmental Expression Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, FlowerSeed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower
No. of tissues expressed in 41 of 4141 of 41
Stress expression Control (D,S,C), Drought, Salt, Cold, Control (H), HeatControl (D,S,C), Drought, Salt, Cold, Control (H), Heat
Young inflorescence (P1, upto 3 cm) 9.969747.01141
Inflorescence (P2, 3-5 cm) 9.600837.03362
Inflorescence (P3, 5-10 cm) 9.756496.73520
Inflorescence (P4, 10-15 cm) 9.966126.79269
Inflorescence (P5, 15-22 cm) 10.218627.29823
Inflorescence (P6, 22-30 cm) 10.369536.03685
Unpollenated stigma at antithesis 9.464917.63666
Ovary at antithesis 9.595828.25436
Embryo. 8.358757.37232
Endosperm. 9.256535.69757
Seed (S1, 0-2 days after pollenation) 8.581195.54350
Seed (S2, 3-4 days after pollenation) 8.388515.27712
Seed (S3, 5-10 days after pollenation) 9.010764.52884
Seed (S4, 11-20 days after pollenation) 8.962884.55949
Seed (S5, 21-29 days after pollenation) 8.895525.71179
Dry seed 6.753117.08505
1h seed (aerobic) 6.789817.05872
1h seed (anaerobic) 6.553617.28333
3h seed (aerobic) 5.733766.99876
3h seed (anaerobic) 5.748807.02461
12h seed (aerobic) 6.175877.50223
12h seed (anaerobic) 5.385907.48828
24h (aerobic) 7.772867.30874
24h seed (anaerobic) 7.008167.38664
27h (aerobic) 8.271467.76357
27h (anaerobic) 8.282518.03451
30h (aerobic) 8.546487.82681
30h (anaerobic) 8.314747.90919
27h (24h N + 3h A) 8.008428.29906
27h (24h A + 3h N) 8.373097.75802
30h (24h N + 6h A) 8.267257.81399
30h (24h A + 6h N) 8.332837.89503
Aerobic grown coleoptiles (4 days) 7.578476.01685
Anoxic grown coleoptiles (4 days) 8.092156.04448
10-day old seedling 8.639775.59688
Leaf from 7-day seedling 8.899846.52711
Mature leaf 10.033537.20998
Young Leaf 11.302447.64009
Semi Apical Meristem 9.419278.39966
Root from 7-day old seedling 10.095207.32110
Root from 7-day Seedling 8.816966.83775