MPIC
RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm) | 2 | 7 | 12 | Global expression heatmaps (Excel): Arabidopsis Rice |
| Arabidopsis RNA Transcript Expression | |
|---|---|
| Locus | AT1G49880 |
| Probe Set ID | 259817_at |
| Developmental Expression | Silique, Seed, Germination, Seedling, Leaf, Stem, Flower |
| No. of tissues expressed in | 36 of 73 |
| Stress expression | N/A |
| flower 2 | 4.28000 |
| flower, stage 9 | 4.36196 |
| flower, stage 10/11 | 4.23574 |
| flower, stage 12 | 4.18135 |
| flower, stage 12, sepals | 4.81624 |
| flower, stage 12, petals | 4.62780 |
| flower, stage 12, stamens | 4.75395 |
| flower, stage 12, carpels | 4.48475 |
| flower, stage 15 | 4.31218 |
| flower, stage 15, pedicels | 4.36088 |
| flower, stage 15, sepals | 5.02675 |
| flower, stage 15, petals | 5.38613 |
| flower, stage 15, stamen | 4.70305 |
| flower, stage 15, carpels | 4.12348 |
| mature pollen | 5.07343 |
| cotyledon | 4.88229 |
| silique, with seeds stage 3; mid globular to early heart embryo | 4.30160 |
| silique, wth seeds stage 4; early to late heart embryo | 4.15936 |
| silique, with seeds stage 5; late heart to mid torpedo embryo | 4.09510 |
| seed, stage 6; mid to late torpedo embryos | 4.37424 |
| seed, stage 7; late torpedo to early walking-stick embryo | 4.65693 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo | 4.81879 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo | 5.17404 |
| seed, stage 10; green-cotyledons embryo | 4.84626 |
| Germination - Harvested seed, collected before dessication | 9.18215 |
| Germination - 0 h dry seed, 15d after collection | 9.30108 |
| Germination - 1 h strat | 9.04676 |
| Germination - 12 h strat | 8.64512 |
| Germination - 48 h strat | 8.84027 |
| Germination - 1 h SL | 8.71361 |
| Germination - 6 h SL | 8.03607 |
| Germination - 12 h SL | 7.66404 |
| Germination - 24 h SL | 6.01093 |
| Germination - 48 h SL | 5.55688 |
| hypocotyl | 4.07423 |
| seedling, green parts | 4.22323 |
| seedling, green parts | 4.97002 |
| seedling, green parts | 4.40749 |
| seedling, green parts | 4.88165 |
| seedling, green parts | 4.52118 |
| shoot apex, vegetative + young leaves | 4.47463 |
| leaves 1 + 2 | 4.94394 |
| shoot apex, vegetative | 4.47466 |
| shoot apex, transition (before bolting) | 4.54331 |
| shoot apex, inflorescence (after bolting) | 4.46191 |
| rosette leaf #4, 1 cm long | 4.86340 |
| rosette leaf # 2 | 5.03986 |
| rosette leaf # 4 | 4.80685 |
| rosette leaf # 6 | 4.80247 |
| rosette leaf # 8 | 4.86449 |
| rosette leaf # 10 | 4.82037 |
| rosette leaf # 12 | 4.88554 |
| leaf 7, petiole | 4.74165 |
| leaf 7, proximal half | 4.97636 |
| leaf 7, distal half | 4.87099 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 4.55275 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 4.49876 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 4.32234 |
| senescing leaf | 4.52113 |
| cauline leaf | 4.70684 |
| vegetative rosette | 4.37625 |
| vegetative rosette | 4.42418 |
| vegetative rosette | 4.61391 |
| leaf | 4.71530 |
| stem, 2nd internode | 4.81698 |
| stem, 1st node | 4.51823 |
| root | 4.02311 |
| root | 3.56739 |
| root | 3.95658 |
| root | 3.92309 |
| roots | 3.72926 |
| root | 3.60350 |
| root | 3.85131 |
| Rice RNA Transcript Expression | ||
|---|---|---|
| Locus | LOC_Os03g10850.1 | LOC_Os03g10850.2 |
| Probe Set ID | OsAffx.12815.1.S1_at | Os.14106.1.S1_at |
| Developmental Expression | Seed, Germination, Germination (N), Seedling (N), Seedling (A/N switches) | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower |
| No. of tissues expressed in | 13 of 41 | 33 of 41 |
| Stress expression | Control (D,S,C), Drought, Control (H), Heat | |
| Young inflorescence (P1, upto 3 cm) | 2.69722 | 4.23388 |
| Inflorescence (P2, 3-5 cm) | 2.75561 | 3.99780 |
| Inflorescence (P3, 5-10 cm) | 2.58695 | 3.81814 |
| Inflorescence (P4, 10-15 cm) | 2.53886 | 3.95630 |
| Inflorescence (P5, 15-22 cm) | 2.54643 | 2.64925 |
| Inflorescence (P6, 22-30 cm) | 2.53331 | 3.09861 |
| Unpollenated stigma at antithesis | 2.56165 | 2.75344 |
| Ovary at antithesis | 2.53328 | 3.23995 |
| Embryo. | 10.50803 | 3.46001 |
| Endosperm. | 4.59169 | 5.13365 |
| Seed (S1, 0-2 days after pollenation) | 2.43449 | 2.62050 |
| Seed (S2, 3-4 days after pollenation) | 2.47122 | 2.70430 |
| Seed (S3, 5-10 days after pollenation) | 2.75872 | 2.61427 |
| Seed (S4, 11-20 days after pollenation) | 2.50892 | 2.55807 |
| Seed (S5, 21-29 days after pollenation) | 2.54282 | 2.62319 |
| Dry seed | 2.73423 | 2.47243 |
| 1h seed (aerobic) | 2.76858 | 2.99942 |
| 1h seed (anaerobic) | 2.78561 | 2.54853 |
| 3h seed (aerobic) | 3.79402 | 4.11301 |
| 3h seed (anaerobic) | 3.79801 | 5.86135 |
| 12h seed (aerobic) | 2.75097 | 2.62799 |
| 12h seed (anaerobic) | 2.88216 | 6.07578 |
| 24h (aerobic) | 2.67511 | 2.90208 |
| 24h seed (anaerobic) | 2.70380 | 6.04692 |
| 27h (aerobic) | 2.23983 | 3.41836 |
| 27h (anaerobic) | 2.21867 | 6.38409 |
| 30h (aerobic) | 2.20961 | 3.40405 |
| 30h (anaerobic) | 2.34600 | 6.31262 |
| 27h (24h N + 3h A) | 2.20324 | 3.27964 |
| 27h (24h A + 3h N) | 2.24530 | 7.28846 |
| 30h (24h N + 6h A) | 2.20544 | 3.19880 |
| 30h (24h A + 6h N) | 2.32481 | 7.14892 |
| Aerobic grown coleoptiles (4 days) | 2.61899 | 2.75791 |
| Anoxic grown coleoptiles (4 days) | 2.71134 | 4.13416 |
| 10-day old seedling | 2.64551 | 3.21790 |
| Leaf from 7-day seedling | 2.62913 | 3.04959 |
| Mature leaf | 2.54340 | 3.09545 |
| Young Leaf | 2.53587 | 2.97583 |
| Semi Apical Meristem | 3.32465 | 4.03389 |
| Root from 7-day old seedling | 2.47566 | 3.03286 |
| Root from 7-day Seedling | 2.62218 | 2.70222 |