MPIC
RNA transcript expression levels are shown for Arabidopsis and rice, representing models of gene expression across plant development based on a range of publically-available microarray datasets (see MPIC paper for details).
| Heatmap scale (natural logarithm) | 2 | 7 | 12 | Global expression heatmaps (Excel): Arabidopsis Rice |
| Arabidopsis RNA Transcript Expression | |
|---|---|
| Locus | AT2G42210 |
| Probe Set ID | 267638_at |
| Developmental Expression | Silique, Seed, Germination, Seedling, Leaf, Stem, Flower, Root |
| No. of tissues expressed in | 73 of 73 |
| Stress expression | Control, Drought, Salt, Cold, Heat |
| flower 2 | 10.57420 |
| flower, stage 9 | 10.52030 |
| flower, stage 10/11 | 10.39540 |
| flower, stage 12 | 10.53520 |
| flower, stage 12, sepals | 10.50310 |
| flower, stage 12, petals | 10.92410 |
| flower, stage 12, stamens | 11.08400 |
| flower, stage 12, carpels | 10.57610 |
| flower, stage 15 | 10.18910 |
| flower, stage 15, pedicels | 10.59340 |
| flower, stage 15, sepals | 10.22630 |
| flower, stage 15, petals | 10.31120 |
| flower, stage 15, stamen | 10.03890 |
| flower, stage 15, carpels | 10.53700 |
| mature pollen | 10.26460 |
| cotyledon | 10.51620 |
| silique, with seeds stage 3; mid globular to early heart embryo | 10.64490 |
| silique, wth seeds stage 4; early to late heart embryo | 10.13560 |
| silique, with seeds stage 5; late heart to mid torpedo embryo | 10.13510 |
| seed, stage 6; mid to late torpedo embryos | 9.90553 |
| seed, stage 7; late torpedo to early walking-stick embryo | 9.71804 |
| seed, stage 8; walking-stick to early curled-cotyledons embryo | 9.08523 |
| seed, stage 9; curled-cotyledons to early green-cotyledons embryo | 9.26171 |
| seed, stage 10; green-cotyledons embryo | 8.98781 |
| Germination - Harvested seed, collected before dessication | 11.12020 |
| Germination - 0 h dry seed, 15d after collection | 11.21440 |
| Germination - 1 h strat | 10.60760 |
| Germination - 12 h strat | 10.54440 |
| Germination - 48 h strat | 10.72650 |
| Germination - 1 h SL | 10.83910 |
| Germination - 6 h SL | 11.15370 |
| Germination - 12 h SL | 11.62210 |
| Germination - 24 h SL | 11.61320 |
| Germination - 48 h SL | 11.58710 |
| hypocotyl | 10.65410 |
| seedling, green parts | 10.23190 |
| seedling, green parts | 10.32540 |
| seedling, green parts | 10.33050 |
| seedling, green parts | 10.13410 |
| seedling, green parts | 10.15620 |
| shoot apex, vegetative + young leaves | 10.68350 |
| leaves 1 + 2 | 10.75710 |
| shoot apex, vegetative | 10.72260 |
| shoot apex, transition (before bolting) | 10.59170 |
| shoot apex, inflorescence (after bolting) | 10.59150 |
| rosette leaf #4, 1 cm long | 10.57990 |
| rosette leaf # 2 | 9.85217 |
| rosette leaf # 4 | 10.25040 |
| rosette leaf # 6 | 10.44560 |
| rosette leaf # 8 | 10.60540 |
| rosette leaf # 10 | 10.63390 |
| rosette leaf # 12 | 10.74310 |
| leaf 7, petiole | 10.60520 |
| leaf 7, proximal half | 10.54080 |
| leaf 7, distal half | 10.42970 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 10.46860 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 10.59660 |
| developmental drift, entire rosette after transition to flowering, but before bolting | 10.43990 |
| senescing leaf | 8.97055 |
| cauline leaf | 9.88538 |
| vegetative rosette | 10.68280 |
| vegetative rosette | 10.54310 |
| vegetative rosette | 10.65010 |
| leaf | 10.50770 |
| stem, 2nd internode | 10.57790 |
| stem, 1st node | 10.65370 |
| root | 11.14600 |
| root | 10.95450 |
| root | 11.09460 |
| root | 10.74340 |
| roots | 10.95010 |
| root | 10.56160 |
| root | 10.61780 |
| Rice RNA Transcript Expression | ||
|---|---|---|
| Locus | LOC_Os02g48610.1 | LOC_Os09g10740.1 |
| Probe Set ID | Os.9255.1.S1_at | OsAffx.6229.1.S1_at |
| Developmental Expression | Seed, Germination, Seedling, Germination (N), Seedling (N), Seedling (A/N switches), Leaf, Root, Flower | Not expressed |
| No. of tissues expressed in | 41 of 41 | 0 of 41 |
| Stress expression | Control (D,S,C), Drought, Salt, Cold, Control (H), Heat | |
| Young inflorescence (P1, upto 3 cm) | 12.54025 | 2.26447 |
| Inflorescence (P2, 3-5 cm) | 12.73223 | 2.26456 |
| Inflorescence (P3, 5-10 cm) | 12.85516 | 2.54264 |
| Inflorescence (P4, 10-15 cm) | 12.95510 | 2.26853 |
| Inflorescence (P5, 15-22 cm) | 13.17256 | 2.26456 |
| Inflorescence (P6, 22-30 cm) | 12.80145 | 2.26456 |
| Unpollenated stigma at antithesis | 12.61567 | 2.24375 |
| Ovary at antithesis | 12.88727 | 2.24054 |
| Embryo. | 13.51224 | 2.25710 |
| Endosperm. | 12.51039 | 2.27132 |
| Seed (S1, 0-2 days after pollenation) | 11.99876 | 2.36236 |
| Seed (S2, 3-4 days after pollenation) | 11.74576 | 2.32344 |
| Seed (S3, 5-10 days after pollenation) | 11.21356 | 2.32352 |
| Seed (S4, 11-20 days after pollenation) | 10.91847 | 2.32363 |
| Seed (S5, 21-29 days after pollenation) | 11.19045 | 2.52871 |
| Dry seed | 12.20772 | 2.32374 |
| 1h seed (aerobic) | 12.13629 | 2.30744 |
| 1h seed (anaerobic) | 12.13678 | 2.31327 |
| 3h seed (aerobic) | 11.83193 | 2.30707 |
| 3h seed (anaerobic) | 12.00562 | 2.30707 |
| 12h seed (aerobic) | 12.10497 | 2.30707 |
| 12h seed (anaerobic) | 11.94495 | 2.30707 |
| 24h (aerobic) | 12.43463 | 2.30707 |
| 24h seed (anaerobic) | 12.22027 | 2.30707 |
| 27h (aerobic) | 12.40042 | 2.29143 |
| 27h (anaerobic) | 12.20325 | 2.29143 |
| 30h (aerobic) | 12.46098 | 2.29143 |
| 30h (anaerobic) | 12.25937 | 2.29143 |
| 27h (24h N + 3h A) | 12.19287 | 2.29143 |
| 27h (24h A + 3h N) | 12.43726 | 2.30471 |
| 30h (24h N + 6h A) | 12.38721 | 2.29143 |
| 30h (24h A + 6h N) | 12.38350 | 2.29143 |
| Aerobic grown coleoptiles (4 days) | 11.27251 | 2.35376 |
| Anoxic grown coleoptiles (4 days) | 11.05384 | 2.35376 |
| 10-day old seedling | 12.25065 | 2.25581 |
| Leaf from 7-day seedling | 12.42322 | 2.24638 |
| Mature leaf | 11.57585 | 2.28078 |
| Young Leaf | 10.92733 | 2.28079 |
| Semi Apical Meristem | 13.15487 | 2.28078 |
| Root from 7-day old seedling | 13.39419 | 2.28259 |
| Root from 7-day Seedling | 13.12124 | 2.25544 |