@import url("ricedb_uwa.css");

body
{
	overflow-y: hidden; /* show scroll bars for short pages to prevent viewport width from changing */
}

.wait
{
	cursor: wait;
}

/**
 * Derived from <https://matthewjamestaylor.com/blog/perfect-3-column.htm>
 **/

header, nav {
	display: block;
}

@media print {
	.body-middle-column {
		left: 0 !important;
		width: auto !important;
	}
	.body-left-column,
	.body-right-column {
		display: none;
	}
	#body_header_upper {
		padding-left: 14px;
	}
}

/* General styles */
body {
	margin:0;
	padding:0;
	border:0;	/* This removes the border around the viewport in old versions of IE */
	width:100%;
	min-width:600px;
}
textarea {
	height: auto;
}
/*
h1, h2, h3 {
	margin:.8em 0 .2em 0;
	padding:0;
}
*/
p {
	margin:.4em 0 .8em 0;
	line-height: 1.4;
	padding:0;
}

dt, dd {
	line-height: 1.4;
	margin-bottom: 0.25em;
}

dd + dt {
	margin-top: 0.5em;
}

/* column container */
.colmask {
	position:relative;	/* This fixes the IE7 overflow hidden bug */
	clear:both;
	/*
	float:left;
	*/
	width:100%;			/* width of whole page */
	/*overflow:hidden;*/		/* This chops off any overhanging divs */
	/*border: 1px solid transparent;*/ /* IE hack */
}
.container {
	width: auto;
	/*
	border: 1px solid black;
	*/
}

/* 3 Column settings */
.colright,
.twocol,
.threecol,
.colleft {
	float:left;
	width:100%;			/* width of page */
	position:relative;
}
.colwrap {
	float: right;
	width:50%;
	position:relative;
}
.twocol_left_column,
.twocol_right_column {
	position: relative;
}
.threecol_content,
.threecol_left_column,
.threecol_right_column {
	float:left;
	position:relative;
	padding:0 0 1em 0;	/* no left and right padding on columns, we just make them narrower instead 
					only padding top and bottom is included here, make it whatever value you need */
	overflow:hidden;
}
.remove {
	text-decoration: line-through;
}

/*
.body-wrap-outer {
	border: 1px solid gray;
}
.body-wrap-inner {
	border: 1px solid yellow;
}
*/
.body-wrap-left {
	/*
	border: 1px solid magenta;
	*/
}
.body-left-column {
	width: 180px;
	position: absolute;
	top: 0;
	/*
	border: 1px solid red;
	*/
}
.body-wrap-right {
	/*
	left: 180px;
	width: 80%;
	position: relative;
	border: 1px solid cyan;
	*/
}
.body-middle-column {
	left: 180px;
	width: 63%;
	position: relative;
	padding: 0 1em;
	margin-bottom: 2em;
	/*
	width: 74%;
	border: 1px solid blue;
	*/
	border-left: 1px solid #D7D7D7;
	border-right: 1px dotted #D7D7D7;
}
.watermark {
	background-image: url(../images/Rice-Watermark-Concept.png);
	background-position: right top;
	background-repeat: no-repeat;
}
.body-right-column {
	width: 25%;
	position: absolute;
	left: 102%;
	top: 0.25em;
	/*
	border: 1px solid green;
	*/
}

#body .threecol {
	border: 1px solid gray;
	right:22%;			/* width of the right column */
}
#body .colleft {
	border: 1px solid yellow;
	right:56%;			/* width of the middle column */
}
#body .threecol_content {
	border: 1px solid red;
	width:55%;			/* width of center column content (column width minus padding on either side) */
	left:101%;			/* 100% plus left padding of center column */
}
#body .threecol_left_column {
	border: 1px solid green;
	width: 170px;			/* Width of left column content (column width minus padding on either side) */
	left:24%;			/* width of (right column) plus (center column left and right padding) plus (left column left padding) */
}
#body .threecol_right_column {
	width:18%;			/* Width of right column content (column width minus padding on either side) */
	left:85%;			/* Please make note of the brackets here:
					(100% - left column width) plus (center column left and right padding) plus (left column left and right padding) plus (right column left padding) */
}

/* Header styles */

#uwa_page_header {
	top: 0;
}
#body {
	top: 116px;
	width: 100%;
}

/* Footer styles */

#page_footer {
	width: 100%;
	box-shadow: 0px -3px 3px rgba(0, 0, 0, 0.25);
	border-top: 1px solid #637708;
	z-index: 999;
}

#page_footer p {
	font-size: 85%;
	margin: 0;
}

/* lift */

#lift__noticesContainer__ ul
{
	margin: 0.5em;
}

#lift__noticesContainer___error, .lift-error
{
	border: 2px solid red;
	border-radius: 8px;
	background-color: yellow;
	margin-bottom: 0.5em;
}

#lift__noticesContainer___warning, .lift-warning
{
	border: 2px solid #1A9BD1;
	border-radius: 8px;
	background-color: #cdf;
	margin-bottom: 0.5em;
}

#lift__noticesContainer___notice, .lift-notice
{
	border: 2px solid #86A20B;
	border-radius: 8px;
	background-color: #E4FFA6;
	margin-bottom: 0.5em;
}

.downtimeWarning {
	margin-bottom: 1em;
	border-bottom: 2px solid #A20B0B;
	padding-bottom: 3px;
	line-height: 1.5;
}

.downtimeWarning h2 {
	color: #A20B0B;
	border-top: 2px solid #A20B0B;
	padding-top: 3px;
}

/* forms */

.neutral_outline
{
	outline: 2px solid transaprent;
}

.success_outline
{
	outline: 2px solid green;
}

.error_outline
{
	outline: 2px solid red;
}

/* blueprint overrides */

blockquote cite,
blockquote i,
blockquote em
{
	font-style: normal;
}

cite i,
cite em
{
	-font-style: normal;
}

table.bottom-border
{
	border-bottom: 2px solid #c3d9ff;
}

/* icons */

div.with-icon
{
	min-height: 50px;
}

table.with-icon
{
	border: none;
	padding: 0;
	margin: 0;
	margin-bottom: 1em;
	width: auto;
}

div.beside-icon
{
	margin-left: 56px;
}

.grey-button, table.grey-button
{
	border: 1px solid gray;
	border-radius: 6px;
	background-color: #ddd;
}

.grey-button:hover, table.grey-button:hover
{
	background-color: #ffe;
}

/* data table, see also datatable.html */

table thead + tbody tr td, /* only modify tables that are data-presenting, i.e., avoid affecting structural layout tables */
.highslide-maincontent td
{
   background-color: #F9F5FF; /* instead of falling through to white background */
}

table.dataTable td
{
	vertical-align: top;
}

table.dataTable thead th
{
	white-space: nowrap;
}

table.dataTable tbody tr:nth-child(even) td,
table.dataTable tbody tr.even td
{
	/*
	 * Override blueprint so that the colouration is not screwed when we dynamically insert an odd number of rows.
	 */
	background-color: inherit;
}

table.dataTable tr.odd
{
	background: #F9F5FF; /* light colour */
}

table.dataTable tr.even {
	background: #e5ecf9; /* medium colour */
}

table.dataTable tr.even td.sorting_1 {
	background-color: #D3D6FF;
}

.extra table thead tr th
{
	background: #A0F8A9;
}

.extra table tbody tr.odd td,
.extra table tbody tr:nth-child(odd) td,
table.dataTable tr.extra.odd td
{
	background: #E2FDE5;
	background: #E4FFE0;
}

.extra table tbody tr.even td,
.extra table tbody tr:nth-child(even) td,
table.dataTable tr.extra.even td
{
	background: #CFFCD6;
	background: #C8FECC;
}

.suggestion
{
	font-style: italic;
}
.suggestion.keyword,
.suggestion .keyword
{
	font-weight: bold;
}

/* jquery ui overrides */

.ui-widget
{
	font-family: inherit;
	font-size: inherit;
}

/*
.ui-widget-content
{
	color: inherit;
}

.ui-widget-content a
{
	color: inherit;
}
*/

/* flat file */

.align-right {
	text-align: right;
}
h2.blue, h3.blue, h4.blue, h5.blue, .flatfile h3, .flatfile h4, .flatfile h5 {
	color: #555;
	color: #08c;
}
.flatfile .orthology h3, .flatfile .orthology h4, .flatfile .orthology h5 {
	color: #00AD00;
}
.flatfile table
{
	border: 1px solid #69c;
	box-shadow: 1px 1px 3px rgba(0, 0, 0, 0.25);
	border-radius: 2px;
	-webkit-background-clip: padding-box;
}
.flatfile table thead th
{
	border-bottom: 1px solid #69c;
	text-transform: uppercase;
}
.flatfile table tbody td,
.highslide-maincontent table tbody td
{
	vertical-align: top;
}
.flatfile table th + th,
.flatfile table th + td,
.flatfile table td + td
{
	border-left: 1px solid #69c;
}
.flatfile .extra table,
.flatfile .extra table thead th,
.flatfile .extra table tbody td
{
	border-color: #03A618;
}
.flatfile th.ui-state-default
{
	border: 1px solid #69c;
	background: #c3d9ff;
	color: black;
}
.flatfile th.horizontal-heading
{
	background-color: #C3D9FF;
	background-color: #E5ECF9;
}
.flatfile .horizontal-heading,
.highslide-maincontent .horizontal-heading
{
	-text-transform: uppercase;
	font-weight: bold;
	text-align: right;
}

/* Highslide */

.highslide-maincontent h2,
.highslide-maincontent h3,
.highslide-maincontent h4,
.highslide-maincontent h5
{
	color: #08C;
}
.highslide-maincontent .extra h2,
.highslide-maincontent .extra h3,
.highslide-maincontent .extra h4,
.highslide-maincontent .extra h5
{
	color: #03A618;
}
.highslide-active-anchor
{
	visibility: visible;
}
.highslide-active-anchor img
{
	background-color: cyan;
	visibility: visible !important; /* because highslide styles are imported after ricedb styles */
	border-radius: 6px;
}
.extra a
{
	color: #168A00;
}
.extra a:active
{
	color: #13CD13;
}
.extra ::selection,
.extra ::-moz-selection
{
	background: #ADFFB0;
}

/* data sources */

ul.data-sources
{
	padding: 0;
}

ul.data-sources cite
{
	font-weight: bold;
	font-style: normal;
}

ul.data-sources li
{
	padding-left: 56px;
	margin-left: 0;
	height: 3.5em;
	list-style-type: none;
	background-position: left top;
	background-repeat: no-repeat;
}

ul.data-sources li
{
	padding-top: 0.5em;
}

ul.data-sources .display-name
{
	font-size: 110%;
}

ul.data-sources li.updated
{
	color: #8A3;
	background-image: url(../images/icons/_0007_Tick.png);
}

ul.data-sources li.updated a
{
	color: #8A3;
}

ul.data-sources li.unreachable
{
	color: #39C;
	background-image: url(../images/icons/_0007_Tick.png);
}

ul.data-sources li.unreachable a
{
	color: #39C;
}

ul.data-sources li.out-of-date
{
	color: #E73;
	background-image: url(../images/icons/_0010_Alert.png);
}

ul.data-sources li.out-of-date a
{
	color: #E73;
}

ul.data-sources .url
{
	text-decoration: none;
}

ul.data-sources p.url
{
	margin: 0;
}

ul.data-sources .url:hover
{
	text-decoration: underline;
}

ul.data-sources .status
{
	font-size: 85%;
}

/* "about" */

.highlight-box {
	margin-left: 1%;
	min-height: 1em;
	height: 20em;
	margin-bottom: 1em;
	background-color: #f5f5f5;
	border: 1px solid #ccc;
	border: 1px solid rgba(0, 0, 0, 0.20);
	-webkit-border-radius: 6px;
	-moz-border-radius: 6px;
	border-radius: 6px;
	-webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.1);
	-moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.1);
	box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.1);
	width: 96%;
}

.highlight-box.short {
	height: 9.5em;
}

.highlight-box p {
	margin-top: 0.5em;
}

.highlight-box div {
	padding: 1em;
}

.highlight-box.half + .highlight-box,
.highlight-box.quarter + .highlight-box,
.highlight-box.three-quarter + .highlight-box {
	margin-left: 2%;
}

.highlight-box.half {
	-display: inline-block;
	float: left;
	width: 47%;
}

.highlight-box.quarter {
	-display: inline-block;
	float: left;
	width: 22%;
}

.highlight-box.three-quarter {
	-display: inline-block;
	float: left;
	width: 72%;
}

.highlight-box blockquote {
	border-color: #ddd;
	border-color: rgba(0, 0, 0, 0.15);
}

.highlight-box.large {
	padding: 24px;
	-webkit-border-radius: 6px;
	-moz-border-radius: 6px;
	border-radius: 6px;
}

.highlight-box.small {
	padding: 9px;
	-webkit-border-radius: 3px;
	-moz-border-radius: 3px;
	border-radius: 3px;
}

/* misc */

.sticky
{
	position: -webkit-sticky;
	position: -moz-sticky;
	position: -ms-sticky;
	position: -o-sticky;
	position: sticky;
}

.old_sticky
{
	position: fixed;
}

.nowrap
{
	white-space: nowrap;
}

ol.query-examples, ol.query-examples ol
{
	counter-reset: item;
}

ol.query-examples li
{
	list-style-type: none;
}

ol.query-examples li:before
{
	content: counters(item, ".") ": ";
	counter-increment: item;
}

ol.query-examples > li + li
{
	margin-top: 0.5em;
}

ol.query-examples > li > ol
{
	margin-top: 0.5em;
}

.clickable, .highslider
{
	cursor: default;
}

.highslider
{
	border: none;
	margin-left: 0.5em;
}

img.highslider
{
	vertical-align: bottom;
}

td.highslide-outline
{
	background: white !important;
}

.highslide-container div
{
	font-family: inherit !important;
}

.code
{
	color: #66C;
	text-indent: -3em;
	margin-left: 3em;
}

.code code
{
	display: block;
}

.newsline + .newsline
{
	margin-top: 1em;
}

.cke_skin_kama .cke_tpl_list {
	height: 350px !important;
}

.click-to-select
{
	cursor: default;
}

.hidden-links a,
a.hidden-link
{
	color: inherit;
	text-decoration: none;
}

.hidden-links a:hover,
a.hidden-link:hover
{
	color: #09F;
	text-decoration: underline;
}

.small
{
	color: gray;
	font-size: 85%;
	line-height: inherit;
}

.silver
{
	color: silver;
}

.blue-silver
{
	color: #7DA1E8;
}

.query-examples
{
	padding-left: 0;
}

#query_search {
	font-size: 125%;
	font-weight: bold;
}

/*
.query-examples > li
{
	border-left: 20px solid silver;
	padding-left: 1em;
}
*/

/* Sections */

.sideline
{
	border-left: 20px solid silver;
	padding-left: 1em;
}

.sideline.summary
{
	border-color: #CFE967;
}
table.dataTable thead th.summary
{
	background: #CFE967;
}

.sideline.identifier
{
	border-color: #FFC267;
}
table.dataTable thead th.identifier
{
	background: #FFC267;
}

.sideline.annotation
{
	border-color: #FF9090;
}
table.dataTable thead th.annotation
{
	background: #FF9090;
}

.sideline.transcript
{
	border-color: #FFee70;
}
table.dataTable thead th.transcript
{
	background: #FFee70;
}

.sideline.protein
{
	border-color: #ACE;
}
table.dataTable thead th.protein
{
	background: #ACE;
}

.sideline.orthology
{
	border-color: #98EC96;
}
table.dataTable thead th.orthology
{
	background: #98EC96;
}

.sideline.sequence
{
	border-color: #DAD;
}
table.dataTable thead th.sequence
{
	background: #DAD;
}

/* For steps and tutorials. */

ol.steps
{
	margin-top: 1em;
	line-height: 1.5;
}

ol.steps li
{
	list-style-type: none;
}

ol.steps li + li
{
	padding-top: 2em;
}

ol.steps li > span
{
	font-size: 150%;
}

ol.steps li > span img
{
	vertical-align: middle;
}

ol.steps li > div
{
	margin-top: 0.5em;
	padding-left: 60px;
}

ol.steps label
{
	width: 12em;
	display: inline-block;
}