ARC Centre of Excellence for Plant Energy Biology

MPIC — mtHSP70 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 104
cTP 65
SP 18
Perox 3

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 3 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT4G37910 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTPmTPmTPmTP
AT5G09590 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTPmTPmTPmTP
Bra002461 Species Brassica rapa Brassica rapa mTP
Bra006027 Species Brassica rapa Brassica rapa mTP
Bra010498 Species Brassica rapa Brassica rapa mTP
Bra010620 Species Brassica rapa Brassica rapa mTP
Bra011794 Species Brassica rapa Brassica rapa mTP
Bra013786 Species Brassica rapa Brassica rapa mTP
Bra015047 Species Brassica rapa Brassica rapa
Bra019231 Species Brassica rapa Brassica rapa mTP
Bra022819 Species Brassica rapa Brassica rapa
Bra028521 Species Brassica rapa Brassica rapa
Bra028628 Species Brassica rapa Brassica rapa mTP
Bra031657 Species Brassica rapa Brassica rapa
gi|17507981|NP_492485.1|ref Species Caenorhabditis elegans Caenorhabditis elegans
gi|17534013|NP_496509.1|ref Species Caenorhabditis elegans Caenorhabditis elegans
CML205C Species Cyanidioschyzon merolae Cyanidioschyzon merolae mTP
CMV163C Species Cyanidioschyzon merolae Cyanidioschyzon merolae
Cre02.g080600.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii mTPmTP
Cre06.g250100.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTPcTP
Cre09.g393200.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii mTPmTP
Carubv10000420m.g Species Capsella rubella Capsella rubella
Carubv10004245m.g Species Capsella rubella Capsella rubella cTPmTPcTP
Carubv10006443m.g Species Capsella rubella Capsella rubella mTPmTP
Carubv10008520m.g Species Capsella rubella Capsella rubella SP
Carubv10013121m.g Species Capsella rubella Capsella rubella cTPmTPmTP
Carubv10028629m.g Species Capsella rubella Capsella rubella cTPmTPcTP
Cucsa.079370.1 Species Cucumis sativus Cucumis sativus
Cucsa.266110.1 Species Cucumis sativus Cucumis sativus cTPmTPcTP
Cucsa.303940.1 Species Cucumis sativus Cucumis sativus SP
Cucsa.331940.1 Species Cucumis sativus Cucumis sativus cTPmTPmTP
gi|66800327|ref|XP_629089.1 Species Dictyostelium discoideum Dictyostelium discoideum
gi|66800557|ref|XP_629204.1 Species Dictyostelium discoideum Dictyostelium discoideum mTP
gi|66818991|ref|XP_643155.1 Species Dictyostelium discoideum Dictyostelium discoideum
gi|66822147|ref|XP_644428.1 Species Dictyostelium discoideum Dictyostelium discoideum
gi|66826525|ref|XP_646617.1 Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.E01024.1 Species Eucalyptus grandis Eucalyptus grandis
Eucgr.G00235.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTPcTP
Eucgr.G01045.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTPmTP
Eucgr.I02583.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTPmTP
Eucgr.I02771.1 Species Eucalyptus grandis Eucalyptus grandis cTPmTPcTP
CBN79170.1|emb|Esi|gi|299469993 Species Ectocarpus siliculosus Ectocarpus siliculosus mTP
Glyma05g36600.1 Species Glycine max Glycine max mTPmTP
Glyma05g36620.1 Species Glycine max Glycine max SP
Glyma07g30290.1 Species Glycine max Glycine max cTPmTPmTP
Glyma08g02940.1 Species Glycine max Glycine max SP
Glyma08g02960.1 Species Glycine max Glycine max
Glyma08g06950.1 Species Glycine max Glycine max cTPmTPmTP
Glyma13g32790.1 Species Glycine max Glycine max cTPmTPmTP
Glyma15g06530.1 Species Glycine max Glycine max cTPmTPmTP
Glyma16g00410.1 Species Glycine max Glycine max cTPmTPcTP
gi|124256496|heat shock 70 kDa protein 1-like [Homo sapiens]|NP_005518.3|ref Species Homo sapiens Homo sapiens cTP
gi|13676857|NP_068814.2|ref Species Homo sapiens Homo sapiens
gi|16507237|NP_005338.1|ref Species Homo sapiens Homo sapiens
gi|167466173|NP_005337.2|ref Species Homo sapiens Homo sapiens
gi|24234688|NP_004125.3|ref Species Homo sapiens Homo sapiens mTP
gi|34419635|NP_002146.2|ref Species Homo sapiens Homo sapiens
gi|530381921|ref|XP_005249127.1 Species Homo sapiens Homo sapiens mTP
gi|530398061|ref|XP_005271593.1 Species Homo sapiens Homo sapiens
gi|530427781|ref|XP_005274915.1 Species Homo sapiens Homo sapiens
gi|530427783|ref|XP_005274916.1 Species Homo sapiens Homo sapiens mTP
gi|530428002|ref|XP_005272870.1n Species Homo sapiens Homo sapiens mTP
gi|530428004|ref|XP_005272871.1 Species Homo sapiens Homo sapiens
gi|5729877|NP_006588.1|ref Species Homo sapiens Homo sapiens
Medtr2g005690.1 Species Medicago truncatula Medicago truncatula cTPmTPcTP
Medtr2g010020.1 Species Medicago truncatula Medicago truncatula cTPmTPmTP
Medtr4g092920.1 Species Medicago truncatula Medicago truncatula cTPmTPmTP
gi|164426355|ref|XP_961753.2 Species Neurospora crassa Neurospora crassa mTP
gi|85080590|ref|XP_956567.1 Species Neurospora crassa Neurospora crassa
gi|85110248|ref|XP_963366.1 Species Neurospora crassa Neurospora crassa
LOC_Os02g02410.1 Species Oryza sativa Oryza sativa SP
LOC_Os02g53420.1 Species Oryza sativa Oryza sativa mTPmTP
LOC_Os03g02260.1 Species Oryza sativa Oryza sativa cTPmTPmTP
LOC_Os03g16920.1 Species Oryza sativa Oryza sativa
LOC_Os05g23740.1 Species Oryza sativa Oryza sativa cTPmTPcTP
LOC_Os05g38530.1 Species Oryza sativa Oryza sativa
LOC_Os09g31486.1 Species Oryza sativa Oryza sativa mTPPerox
LOC_Os09g31486.2 Species Oryza sativa Oryza sativa Perox
LOC_Os12g14070.1 Species Oryza sativa Oryza sativa cTPmTPcTP
Phpat.001G091000.1 Species Physcomitrella patens Physcomitrella patens mTPmTP
Phpat.001G091100.1 Species Physcomitrella patens Physcomitrella patens mTPmTP
Phpat.002G052800.1 Species Physcomitrella patens Physcomitrella patens mTPmTP
Phpat.002G053100.1 Species Physcomitrella patens Physcomitrella patens cTPmTPmTP
Phpat.003G101600.1 Species Physcomitrella patens Physcomitrella patens SP
Phpat.004G083500.1 Species Physcomitrella patens Physcomitrella patens
Phpat.004G105700.1 Species Physcomitrella patens Physcomitrella patens cTPcTP
Phpat.007G061700.1 Species Physcomitrella patens Physcomitrella patens cTPcTP
Phpat.007G061800.1 Species Physcomitrella patens Physcomitrella patens cTPcTP
Phpat.007G061900.1 Species Physcomitrella patens Physcomitrella patens cTPcTP
Phpat.010G067200.1 Species Physcomitrella patens Physcomitrella patens SP
Phpat.026G035400.1 Species Physcomitrella patens Physcomitrella patens cTPmTPcTP
Potri.001G087500.1 Species Populus trichocarpa Populus trichocarpa SP
Potri.001G285500.1 Species Populus trichocarpa Populus trichocarpa cTPmTPmTP
Potri.003G006300.1 Species Populus trichocarpa Populus trichocarpa cTPmTPcTP
Potri.003G143600.1 Species Populus trichocarpa Populus trichocarpa SP
Potri.004G224400.1 Species Populus trichocarpa Populus trichocarpa cTPmTPcTP
Potri.009G079700.1 Species Populus trichocarpa Populus trichocarpa cTPmTPmTP
Potri.012G017600.1 Species Populus trichocarpa Populus trichocarpa SP
Potri.013G018000.1 Species Populus trichocarpa Populus trichocarpa SP
29765.m000739|29765.t000021 Species Ricinus communis Ricinus communis cTPmTPcTP
29804.m001529|29804.t000060 Species Ricinus communis Ricinus communis cTPmTPmTP
30068.m002531|30068.t000021 Species Ricinus communis Ricinus communis SP
YJR045C Species Saccharomyces cerevisiae Saccharomyces cerevisiae mTPmTPmTP
168287 Species Selaginella moellendorffii Selaginella moellendorffii
230659 Species Selaginella moellendorffii Selaginella moellendorffii
267815 Species Selaginella moellendorffii Selaginella moellendorffii
440900 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400003122|PGSC0003DMT400008099 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG400010677|PGSC0003DMT400027702 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG400012254|PGSC0003DMT400031937 Species Solanum tuberosum Solanum tuberosum SP
PGSC0003DMG400018544|PGSC0003DMT400047710 Species Solanum tuberosum Solanum tuberosum mTPSP
PGSC0003DMG400024707|PGSC0003DMT400063543 Species Solanum tuberosum Solanum tuberosum SP
PGSC0003DMG400024887|PGSC0003DMT400064031 Species Solanum tuberosum Solanum tuberosum cTPmTPcTP
PGSC0003DMG400027750|PGSC0003DMT400071337 Species Solanum tuberosum Solanum tuberosum
Vocar20003521m.g Species Volvox carteri Volvox carteri cTPmTPmTP
Vocar20005243m.g Species Volvox carteri Volvox carteri cTPmTPmTP
GSVIVG01006769001|GSVIVT01006769001 Species Vitis vinifera Vitis vinifera cTPmTPmTP
GSVIVG01008331001|GSVIVT01008331001 Species Vitis vinifera Vitis vinifera
GSVIVG01019607001|GSVIVT01019607001 Species Vitis vinifera Vitis vinifera SP
GSVIVG01026014001|GSVIVT01026014001 Species Vitis vinifera Vitis vinifera
GSVIVG01038517001|GSVIVT01038517001 Species Vitis vinifera Vitis vinifera cTPmTPmTP
AC209784.3_FG007|AC209784.3_FGT007 Species Zea mays Zea mays
GRMZM2G079668_T01 Species Zea mays Zea mays cTPmTPcTP
GRMZM2G111475_T01 Species Zea mays Zea mays cTPmTPcTP
GRMZM2G114793_T01 Species Zea mays Zea mays SP
GRMZM2G153815_T01 Species Zea mays Zea mays mTPmTP
GRMZM2G310431_T01 Species Zea mays Zea mays
GRMZM2G365374_T01 Species Zea mays Zea mays cTPmTPPeroxmTP
GRMZM2G366532_T01 Species Zea mays Zea mays
GRMZM2G415007_T01 Species Zea mays Zea mays SP
GRMZM5G802801_T01 Species Zea mays Zea mays

Sequences (FASTA)