MPIC - mtHSP60 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithmâ€™s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction	Frequency
mTP	194
cTP	19

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 1 other	Species	ChloroP	MitoProt2	PProwler	Predotar	TargetP
AT2G33210	Arabidopsis thaliana		mTP	mTP	mTP	mTP
AT3G13860	Arabidopsis thaliana		mTP	mTP	mTP	mTP
AT3G23990	Arabidopsis thaliana		mTP	mTP	mTP	mTP
Bra001524	Brassica rapa	cTP	mTP	mTP	mTP	mTP
Bra001934	Brassica rapa	cTP	mTP	mTP	mTP	mTP
Bra005514	Brassica rapa		mTP	mTP	mTP	mTP
Bra021836	Brassica rapa
Bra022931	Brassica rapa		mTP	mTP	mTP	mTP
gi\|17555558\|NP_497429.1\|ref	Caenorhabditis elegans		mTP	mTP	mTP
CMB021CT	Cyanidioschyzon merolae		mTP	mTP
CMQ270CT	Cyanidioschyzon merolae		mTP	mTP	mTP
CMV086CT	Cyanidioschyzon merolae		mTP	cTP	mTP
Cre06.g309100.t1.2	Chlamydomonas reinhardtii		mTP	mTP	mTP	mTP
Carubv10013241m.g	Capsella rubella	cTP		cTP		cTP
Carubv10013333m.g	Capsella rubella	cTP	mTP	mTP	mTP	mTP
Carubv10022887m.g	Capsella rubella		mTP	mTP	mTP	mTP
Cucsa.078710.1	Cucumis sativus	cTP	mTP	mTP	mTP	mTP
Cucsa.360540.1	Cucumis sativus		mTP	mTP	mTP	mTP
Cucsa.383180.1	Cucumis sativus	cTP	mTP	mTP	mTP	mTP
gi\|66806233	Dictyostelium discoideum		mTP	cTP	mTP
Eucgr.F03134.1	Eucalyptus grandis
Eucgr.H02866.1	Eucalyptus grandis		mTP	mTP	mTP	mTP
Esi0161_0060	Ectocarpus siliculosus		mTP	mTP	mTP
Glyma07g01190.1	Glycine max		mTP	mTP	mTP	mTP
Glyma08g20560.1	Glycine max		mTP	mTP	mTP
Glyma08g20560.2	Glycine max
Glyma10g25630.1	Glycine max	cTP	mTP	mTP	mTP	mTP
Glyma10g33680.1	Glycine max		mTP	mTP	mTP	mTP
Glyma20g19980.1	Glycine max		mTP	mTP	mTP	mTP
Glyma20g33910.1	Glycine max		mTP	mTP	mTP	mTP
gi\|31542947	Homo sapiens		mTP	mTP	mTP
Medtr1g090130.1	Medicago truncatula		mTP	mTP	mTP	mTP
Medtr1g090140.1	Medicago truncatula		mTP	mTP	mTP	mTP
Medtr8g017080.1	Medicago truncatula	cTP	mTP	mTP	mTP	mTP
gi\|164428039	Neurospora crassa			cTP
LOC_Os03g04970.1	Oryza sativa		mTP	mTP	mTP	mTP
LOC_Os05g46290.1	Oryza sativa		mTP	mTP	mTP	mTP
LOC_Os10g32550.1	Oryza sativa	cTP	mTP	cTP		cTP
Phpat.004G086700.1	Physcomitrella patens		mTP	mTP	mTP	mTP
Phpat.013G023400.1	Physcomitrella patens		mTP	mTP	mTP	mTP
Phpat.020G069000.1	Physcomitrella patens		mTP	mTP		mTP
Phpat.026G009800.1	Physcomitrella patens		mTP	mTP	mTP	mTP
Potri.001G054400.1	Populus trichocarpa	cTP	mTP	mTP	mTP	mTP
Potri.002G252900.1	Populus trichocarpa		mTP	mTP	mTP	mTP
Potri.003G037400.1	Populus trichocarpa		mTP
Potri.003G039600.1	Populus trichocarpa
Potri.003G173900.1	Populus trichocarpa		mTP	mTP	mTP	mTP
28694.m000667\|28694.t000010	Ricinus communis			mTP	mTP	mTP
29904.m003020\|29904.t000134	Ricinus communis		mTP	mTP	mTP	mTP
30204.m001817\|30204.t000086	Ricinus communis		mTP	mTP	mTP	mTP
YLR259C	Saccharomyces cerevisiae		mTP	mTP	mTP
405358	Selaginella moellendorffii
74977	Selaginella moellendorffii
85251	Selaginella moellendorffii			mTP		mTP
PGSC0003DMG400002585\|PGSC0003DMT400006642	Solanum tuberosum
PGSC0003DMG400011575\|PGSC0003DMT400030265	Solanum tuberosum		mTP	mTP	mTP	mTP
PGSC0003DMG401027165\|PGSC0003DMT400069855	Solanum tuberosum		mTP	mTP	mTP	mTP
Vocar20007800m.g	Volvox carteri		mTP	mTP	mTP	mTP
GSVIVG01016859001\|GSVIVT01016859001	Vitis vinifera		mTP	mTP	mTP	mTP
GSVIVG01029025001\|GSVIVT01029025001	Vitis vinifera		mTP	mTP	mTP	mTP
GRMZM2G074790_T01	Zea mays		mTP	mTP	mTP	mTP
GRMZM2G416120_T01	Zea mays	cTP	mTP	mTP	mTP	mTP
GRMZM2G458208_T01	Zea mays	cTP	mTP	mTP	mTP	mTP

Sequences (FASTA)

ARC Centre of Excellence for Plant Energy Biology

MPIC — mtHSP60 Targeting Predictions

Abbreviations