ARC Centre of Excellence for Plant Energy Biology

MPIC — ZIM17,TIM15 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 16
cTP 14

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G68730 Species Arabidopsis thaliana Arabidopsis thaliana
AT3G54826 Species Arabidopsis thaliana Arabidopsis thaliana
AT5G27280 Species Arabidopsis thaliana Arabidopsis thaliana
Bra003197 Species Brassica rapa Brassica rapa
Bra007101 Species Brassica rapa Brassica rapa
Q9TXQ4_CAEEL|tr Species Caenorhabditis elegans Caenorhabditis elegans
CMT595C Species Cyanidioschyzon merolae Cyanidioschyzon merolae
Cre07.g334850.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTP
Carubv10018399m.g Species Capsella rubella Capsella rubella cTPmTP
Cucsa.284080|Cucsa.284090.2 Species Cucumis sativus Cucumis sativus cTPcTP
Cucsa.308490.1 Species Cucumis sativus Cucumis sativus mTP
gi|66800951 Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.G02856.1 Species Eucalyptus grandis Eucalyptus grandis mTP
Esi0238_0026 Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma01g23015.1 Species Glycine max Glycine max mTP
Glyma02g14430.1 Species Glycine max Glycine max cTPcTP
Glyma10g35330.1 Species Glycine max Glycine max mTP
Glyma20g32180.1 Species Glycine max Glycine max mTP
gi|124249392 Species Homo sapiens Homo sapiens
Medtr1g094720.1 Species Medicago truncatula Medicago truncatula mTP
gi|85116624 Species Neurospora crassa Neurospora crassa
LOC_Os02g57430.1 Species Oryza sativa Oryza sativa cTPmTP
Phpat.005G013800.1 Species Physcomitrella patens Physcomitrella patens mTP
Phpat.010G079800.1 Species Physcomitrella patens Physcomitrella patens mTP
Phpat.021G072000.1 Species Physcomitrella patens Physcomitrella patens cTPcTP
Potri.008G037300.1 Species Populus trichocarpa Populus trichocarpa cTPmTP
Potri.010G132400.1 Species Populus trichocarpa Populus trichocarpa cTPcTP
29595.m000284|29595.t000008 Species Ricinus communis Ricinus communis cTPmTP
YNL310C Species Saccharomyces cerevisiae Saccharomyces cerevisiae
58719 Species Selaginella moellendorffii Selaginella moellendorffii
9162 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400025127|PGSC0003DMT400064691 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG400027152|PGSC0003DMT400069831 Species Solanum tuberosum Solanum tuberosum cTPmTP
D8TZD5_VOLCA|tr Species Volvox carteri Volvox carteri
GSVIVG01016242001|GSVIVT01016242001 Species Vitis vinifera Vitis vinifera mTP
GRMZM2G064608_T01 Species Zea mays Zea mays mTP

Sequences (FASTA)