ARC Centre of Excellence for Plant Energy Biology

MPIC — UNKNOWN-PRAT-5 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 4
mTP 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT3G25120 Species Arabidopsis thaliana Arabidopsis thaliana
Bra015100 Species Brassica rapa Brassica rapa
Bra032686 Species Brassica rapa Brassica rapa
Carubv10014714 Species Capsella rubella Capsella rubella
Cucsa.077990 Species Cucumis sativus Cucumis sativus
Eucgr.K02137 Species Eucalyptus grandis Eucalyptus grandis cTP
Glyma17g16170 Species Glycine max Glycine max cTPcTP
Medtr8g012725.1 Species Medicago truncatula Medicago truncatula
LOC_Os04g30740 Species Oryza sativa Oryza sativa
Phpat.022G050400 Species Physcomitrella patens Physcomitrella patens
Potri.002G246000 Species Populus trichocarpa Populus trichocarpa
30217.m000255|30217.t000006 Species Ricinus communis Ricinus communis
426311 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400022033|PGSC0003DMT400056658 Species Solanum tuberosum Solanum tuberosum
GSVIVG01003251001 Species Vitis vinifera Vitis vinifera cTP
GRMZM2G076351 Species Zea mays Zea mays mTP

Sequences (FASTA)