ARC Centre of Excellence for Plant Energy Biology

MPIC — UNKNOWN-PRAT-3,UNKNOWN-PRAT-4 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 4
cTP 3
SP 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT3G49560 Species Arabidopsis thaliana Arabidopsis thaliana
AT5G24650 Species Arabidopsis thaliana Arabidopsis thaliana
Bra009782 Species Brassica rapa Brassica rapa
Bra017976 Species Brassica rapa Brassica rapa
Bra025133 Species Brassica rapa Brassica rapa
Bra041064 Species Brassica rapa Brassica rapa SP
Cre03.g183100.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10001771m.g Species Capsella rubella Capsella rubella
Carubv10017861m.g Species Capsella rubella Capsella rubella
Cucsa.202450.1 Species Cucumis sativus Cucumis sativus
Eucgr.A00976.1 Species Eucalyptus grandis Eucalyptus grandis
Eucgr.K00480.1 Species Eucalyptus grandis Eucalyptus grandis
Eucgr.K00528.1 Species Eucalyptus grandis Eucalyptus grandis cTP
Glyma04g40360.1 Species Glycine max Glycine max
Glyma06g14420.1 Species Glycine max Glycine max
Medtr3g093380.1 Species Medicago truncatula Medicago truncatula
LOC_Os02g32530.1 Species Oryza sativa Oryza sativa cTPmTP
LOC_Os04g33220.1 Species Oryza sativa Oryza sativa mTP
Phpat.016G075300.1 Species Physcomitrella patens Physcomitrella patens
Phpat.025G026700.1 Species Physcomitrella patens Physcomitrella patens
Potri.012G004600.1 Species Populus trichocarpa Populus trichocarpa
Potri.015G000600.1 Species Populus trichocarpa Populus trichocarpa
30154.m001133|30154.t000017 Species Ricinus communis Ricinus communis
81847 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400000572|PGSC0003DMT400001542 Species Solanum tuberosum Solanum tuberosum
Vocar20007903m.g Species Volvox carteri Volvox carteri
GSVIVG01038683001|GSVIVT01038683001 Species Vitis vinifera Vitis vinifera cTPmTP
GRMZM2G010743_T01 Species Zea mays Zea mays
GRMZM2G089507_T01 Species Zea mays Zea mays mTP
GRMZM2G473463_T01 Species Zea mays Zea mays

Sequences (FASTA)