Computational targeting prediction programs were run en bloc for all included species using each algorithmâs default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).
| Prediction | Frequency |
|---|---|
| cTP | 18 |
cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway
| cTP predicted | Species | ChloroP | MitoProt2 | PProwler | Predotar | PTS1 | TargetP |
|---|---|---|---|---|---|---|---|
| AT4G26670 |
Arabidopsis thaliana | ||||||
| AT5G55510 |
Arabidopsis thaliana | ||||||
| Bra002900 |
Brassica rapa | ||||||
| Bra026412 |
Brassica rapa | ||||||
| Bra028975 |
Brassica rapa | ||||||
| Carubv10005731m.g |
Capsella rubella | ||||||
| Carubv10027112m.g |
Capsella rubella | ||||||
| Cucsa.042410.1 |
Cucumis sativus | cTP | |||||
| Eucgr.F03519.1 |
Eucalyptus grandis | cTP | |||||
| Glyma0121s00230.2 |
Glycine max | ||||||
| Glyma02g46620.1 |
Glycine max | cTP | |||||
| Glyma08g43515.1 |
Glycine max | cTP | cTP | ||||
| Glyma14g02050.1 |
Glycine max | cTP | |||||
| Glyma18g09772.1 |
Glycine max | cTP | cTP | ||||
| Glyma18g10010 |
Glycine max | cTP | |||||
| Medtr5g094300.1 |
Medicago truncatula | ||||||
| LOC_Os03g09870.1 |
Oryza sativa | ||||||
| LOC_Os10g22039.1 |
Oryza sativa | ||||||
| LOC_Os12g33020.1 |
Oryza sativa | ||||||
| Phpat.023G040200.1 |
Physcomitrella patens | ||||||
| Phpat.024G046400.1 |
Physcomitrella patens | ||||||
| Potri.001G360300.1 |
Populus trichocarpa | cTP | cTP | ||||
| Potri.011G088500.1 |
Populus trichocarpa | cTP | |||||
| 27613.m000630|27613.t000023 |
Ricinus communis | cTP | cTP | ||||
| 68615 |
Selaginella moellendorffii | cTP | |||||
| PGSC0003DMG401022191|PGSC0003DMT400057120 |
Solanum tuberosum | cTP | |||||
| GSVIVG01037765001|GSVIVT01037765001 |
Vitis vinifera | cTP | |||||
| GRMZM2G072415_T01 |
Zea mays | ||||||
| GRMZM2G092286_T01 |
Zea mays | cTP | |||||
| GRMZM2G112640_T01 |
Zea mays | ||||||
| GRMZM2G120530_T01 |
Zea mays |