ARC Centre of Excellence for Plant Energy Biology

MPIC — UNKNOWN-PRAT-1,UNKNOWN-PRAT-2 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 18

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT4G26670 Species Arabidopsis thaliana Arabidopsis thaliana
AT5G55510 Species Arabidopsis thaliana Arabidopsis thaliana
Bra002900 Species Brassica rapa Brassica rapa
Bra026412 Species Brassica rapa Brassica rapa
Bra028975 Species Brassica rapa Brassica rapa
Carubv10005731m.g Species Capsella rubella Capsella rubella
Carubv10027112m.g Species Capsella rubella Capsella rubella
Cucsa.042410.1 Species Cucumis sativus Cucumis sativus cTP
Eucgr.F03519.1 Species Eucalyptus grandis Eucalyptus grandis cTP
Glyma0121s00230.2 Species Glycine max Glycine max
Glyma02g46620.1 Species Glycine max Glycine max cTP
Glyma08g43515.1 Species Glycine max Glycine max cTPcTP
Glyma14g02050.1 Species Glycine max Glycine max cTP
Glyma18g09772.1 Species Glycine max Glycine max cTPcTP
Glyma18g10010 Species Glycine max Glycine max cTP
Medtr5g094300.1 Species Medicago truncatula Medicago truncatula
LOC_Os03g09870.1 Species Oryza sativa Oryza sativa
LOC_Os10g22039.1 Species Oryza sativa Oryza sativa
LOC_Os12g33020.1 Species Oryza sativa Oryza sativa
Phpat.023G040200.1 Species Physcomitrella patens Physcomitrella patens
Phpat.024G046400.1 Species Physcomitrella patens Physcomitrella patens
Potri.001G360300.1 Species Populus trichocarpa Populus trichocarpa cTPcTP
Potri.011G088500.1 Species Populus trichocarpa Populus trichocarpa cTP
27613.m000630|27613.t000023 Species Ricinus communis Ricinus communis cTPcTP
68615 Species Selaginella moellendorffii Selaginella moellendorffii cTP
PGSC0003DMG401022191|PGSC0003DMT400057120 Species Solanum tuberosum Solanum tuberosum cTP
GSVIVG01037765001|GSVIVT01037765001 Species Vitis vinifera Vitis vinifera cTP
GRMZM2G072415_T01 Species Zea mays Zea mays
GRMZM2G092286_T01 Species Zea mays Zea mays cTP
GRMZM2G112640_T01 Species Zea mays Zea mays
GRMZM2G120530_T01 Species Zea mays Zea mays

Sequences (FASTA)