ARC Centre of Excellence for Plant Energy Biology

MPIC — TOM7 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 18
cTP 16

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G64220 Species Arabidopsis thaliana Arabidopsis thaliana cTPcTPcTP
AT5G41685 Species Arabidopsis thaliana Arabidopsis thaliana
Bra025479 Species Brassica rapa Brassica rapa
Bra027687 Species Brassica rapa Brassica rapa
Bra027750 Species Brassica rapa Brassica rapa
Bra041087 Species Brassica rapa Brassica rapa
gi|17557031 Species Caenorhabditis elegans Caenorhabditis elegans cTP
Cre10.g437500.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10006750 Species Capsella rubella Capsella rubella
Carubv10021245 Species Capsella rubella Capsella rubella cTPcTPcTP
Cucsa.073030 Species Cucumis sativus Cucumis sativus mTPmTPcTP
gi|66811268 Species Dictyostelium discoideum Dictyostelium discoideum cTP
Eucgr.H00014 Species Eucalyptus grandis Eucalyptus grandis
gi|298707615 Species Ectocarpus siliculosus Ectocarpus siliculosus cTP
Glyma05g36420 Species Glycine max Glycine max mTPmTP
Glyma08g03150 Species Glycine max Glycine max mTPmTP
gi|9506859 Species Homo sapiens Homo sapiens cTPmTP
Medtr3g055500 Species Medicago truncatula Medicago truncatula
Medtr3g061970 Species Medicago truncatula Medicago truncatula
gi|85101402 Species Neurospora crassa Neurospora crassa cTP
LOC_Os05g50654 Species Oryza sativa Oryza sativa cTPcTPcTP
Phpat.014G076800 Species Physcomitrella patens Physcomitrella patens mTPmTP
Phpat.017G070000 Species Physcomitrella patens Physcomitrella patens
Potri.006G077500 Species Populus trichocarpa Populus trichocarpa mTP
Potri.018G145400 Species Populus trichocarpa Populus trichocarpa mTP
Potri.018G146500 Species Populus trichocarpa Populus trichocarpa mTP
Potri.T161400 Species Populus trichocarpa Populus trichocarpa mTP
30115.t000065 Species Ricinus communis Ricinus communis mTPmTPmTP
YNL070W Species Saccharomyces cerevisiae Saccharomyces cerevisiae mTPcTP
59958 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400021021 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG402013687 Species Solanum tuberosum Solanum tuberosum mTP
Vocar20009060m Species Volvox carteri Volvox carteri
GRMZM2G339503 Species Zea mays Zea mays

Sequences (FASTA)