ARC Centre of Excellence for Plant Energy Biology

MPIC — TOM6 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 17
cTP 3
Perox 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G49410 Species Arabidopsis thaliana Arabidopsis thaliana mTP
Bra014187 Species Brassica rapa Brassica rapa
Cucsa.109920.1 Species Cucumis sativus Cucumis sativus mTPmTP
Glyma11g13030.2 Species Glycine max Glycine max mTPmTP
Glyma12g05120 Species Glycine max Glycine max mTP
Glyma12g08730 Species Glycine max Glycine max mTPmTP
Glyma16g06370 Species Glycine max Glycine max mTPmTP
gi|186939605 Species Homo sapiens Homo sapiens cTP
gi|13324616 Species Neurospora crassa Neurospora crassa mTPcTPmTP
Phpat.005G084200 Species Physcomitrella patens Physcomitrella patens mTP
Phpat.006G025100 Species Physcomitrella patens Physcomitrella patens mTP
Potri.004G149200 Species Populus trichocarpa Populus trichocarpa
Potri.009G110100 Species Populus trichocarpa Populus trichocarpa
29851.m002468|29851.t000110 Species Ricinus communis Ricinus communis mTPmTP
YOR045W Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTPPerox
PGSC0003DMG400025161|PGSC0003DMT400064778 Species Solanum tuberosum Solanum tuberosum mTP

Sequences (FASTA)