ARC Centre of Excellence for Plant Energy Biology

MPIC — TOM5 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 4
mTP 2

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT5G08040 Species Arabidopsis thaliana Arabidopsis thaliana
Bra005963 Species Brassica rapa Brassica rapa
Bra028674 Species Brassica rapa Brassica rapa
gi|158282668 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10002362 Species Capsella rubella Capsella rubella
Cucsa.113270.1_CUCSA Species Cucumis sativus Cucumis sativus
Glyma05g00341 Species Glycine max Glycine max
Glyma17g08701 Species Glycine max Glycine max
gi|197333732 Species Homo sapiens Homo sapiens cTP
Q8N4H5|sp Species Homo sapiens Homo sapiens cTP
gi|301014722 Species Neurospora crassa Neurospora crassa cTP
LOC_Os12g38650 Species Oryza sativa Oryza sativa
Phpat.003G139800 Species Physcomitrella patens Physcomitrella patens mTPmTP
Phpat.012G084700 Species Physcomitrella patens Physcomitrella patens
Potri.015G058500 Species Populus trichocarpa Populus trichocarpa
30138.t000139 Species Ricinus communis Ricinus communis
YPR133W-A Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTP
PGSC0003DMG400024536 Species Solanum tuberosum Solanum tuberosum
GSVIVG01008105001 Species Vitis vinifera Vitis vinifera
GRMZM2G058057 Species Zea mays Zea mays

Sequences (FASTA)