ARC Centre of Excellence for Plant Energy Biology

MPIC — TOM40 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 11
mTP 3
Perox 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G50400 Species Arabidopsis thaliana Arabidopsis thaliana
AT3G20000 Species Arabidopsis thaliana Arabidopsis thaliana
Bra018846 Species Brassica rapa Brassica rapa cTP
Bra035826 Species Brassica rapa Brassica rapa
gi|17531993 Species Caenorhabditis elegans Caenorhabditis elegans cTP
CMF062C Species Cyanidioschyzon merolae Cyanidioschyzon merolae cTP
Cr|g10494 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTP
Carubv10011140m Species Capsella rubella Capsella rubella
Carubv10014148 Species Capsella rubella Capsella rubella
Cucsa.094410 Species Cucumis sativus Cucumis sativus cTP
XP_642798.1 Species Dictyostelium discoideum Dictyostelium discoideum cTP
Eucgr.J00343 Species Eucalyptus grandis Eucalyptus grandis
Esi0055_0058 Species Ectocarpus siliculosus Ectocarpus siliculosus mTPmTPmTP
Glyma05g34360 Species Glycine max Glycine max cTP
Glyma08g05280 Species Glycine max Glycine max
gi|193083122 Species Homo sapiens Homo sapiens cTP
Medtr8g106010 Species Medicago truncatula Medicago truncatula
Medtr8g106070 Species Medicago truncatula Medicago truncatula
gi|85103565 Species Neurospora crassa Neurospora crassa cTP
LOC_Os01g16910 Species Oryza sativa Oryza sativa
LOC_Os03g20750 Species Oryza sativa Oryza sativa
Phpat.018G049400 Species Physcomitrella patens Physcomitrella patens
Phpat.022G024000 Species Physcomitrella patens Physcomitrella patens
Phpat.022G068500 Species Physcomitrella patens Physcomitrella patens
Potri.007G000200 Species Populus trichocarpa Populus trichocarpa
Potri.014G004100 Species Populus trichocarpa Populus trichocarpa
30131.m007267|30131.t000418 Species Ricinus communis Ricinus communis
YMR203W Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTPPerox
403082 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG402020176 Species Solanum tuberosum Solanum tuberosum cTP
Vocar20011569m Species Volvox carteri Volvox carteri
GSVIVG01038525001 Species Vitis vinifera Vitis vinifera
GRMZM2G043983 Species Zea mays Zea mays
GRMZM2G120876 Species Zea mays Zea mays
GRMZM2G174696 Species Zea mays Zea mays

Sequences (FASTA)