ARC Centre of Excellence for Plant Energy Biology

MPIC — TOM20 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 6
Perox 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G27390 Species Arabidopsis thaliana Arabidopsis thaliana
AT3G27070 Species Arabidopsis thaliana Arabidopsis thaliana
AT3G27080 Species Arabidopsis thaliana Arabidopsis thaliana
AT5G40930 Species Arabidopsis thaliana Arabidopsis thaliana
Bra010946 Species Brassica rapa Brassica rapa
Bra030044 Species Brassica rapa Brassica rapa
Bra032826 Species Brassica rapa Brassica rapa
Bra032980 Species Brassica rapa Brassica rapa
gi|17560096 Species Caenorhabditis elegans Caenorhabditis elegans
Carubv10005798 Species Capsella rubella Capsella rubella
Carubv10018043 Species Capsella rubella Capsella rubella
Carubv10018077 Species Capsella rubella Capsella rubella
Cucsa.054120.1 Species Cucumis sativus Cucumis sativus
Cucsa.395030.1 Species Cucumis sativus Cucumis sativus
XP_642798 Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.I01647 Species Eucalyptus grandis Eucalyptus grandis
CBJ27905.1|emb|gi|298715256 Species Ectocarpus siliculosus Ectocarpus siliculosus mTP
Glyma05g14300.1 Species Glycine max Glycine max
Glyma11g37120.1 Species Glycine max Glycine max
Glyma18g01030.2 Species Glycine max Glycine max
Glyma19g17930 Species Glycine max Glycine max
gi|46409384 Species Homo sapiens Homo sapiens mTP
Medtr3g085410 Species Medicago truncatula Medicago truncatula
Medtr3g085420 Species Medicago truncatula Medicago truncatula
Medtr6g012540 Species Medicago truncatula Medicago truncatula mTP
Medtr6g044560 Species Medicago truncatula Medicago truncatula
Medtr7g099160 Species Medicago truncatula Medicago truncatula Perox
gi|85104848 Species Neurospora crassa Neurospora crassa
LOC_Os01g69250 Species Oryza sativa Oryza sativa
Phpat.016G052500 Species Physcomitrella patens Physcomitrella patens
Phpat.027G024400 Species Physcomitrella patens Physcomitrella patens mTP
Potri.001G054900 Species Populus trichocarpa Populus trichocarpa
Potri.001G330200 Species Populus trichocarpa Populus trichocarpa
Potri.003G173400 Species Populus trichocarpa Populus trichocarpa
29929.t000160 Species Ricinus communis Ricinus communis
30190.t000164 Species Ricinus communis Ricinus communis
g13148.t1 Species Ricinus communis Ricinus communis
YGR082W Species Saccharomyces cerevisiae Saccharomyces cerevisiae mTP
437971 Species Selaginella moellendorffii Selaginella moellendorffii
74372 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400020255 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG401022140 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG402022140 Species Solanum tuberosum Solanum tuberosum
gi|302850820|ref|XP_002956936.1 Species Volvox carteri Volvox carteri mTP
GSVIVG01033094001 Species Vitis vinifera Vitis vinifera
GRMZM2G100402 Species Zea mays Zea mays
GRMZM2G105531_T01 Species Zea mays Zea mays
GRMZM2G314434_T01 Species Zea mays Zea mays

Sequences (FASTA)