ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM9 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 7
Perox 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 1 other Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT3G46560 Species Arabidopsis thaliana Arabidopsis thaliana
Bra027011 Species Brassica rapa Brassica rapa
Bra039260 Species Brassica rapa Brassica rapa
gi|17538524 Species Caenorhabditis elegans Caenorhabditis elegans cTP
gi|71982227 Species Caenorhabditis elegans Caenorhabditis elegans cTPPerox
CMR213C Species Cyanidioschyzon merolae Cyanidioschyzon merolae cTP
Cre01.g033400 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10014995 Species Capsella rubella Capsella rubella
Carubv10019530 Species Capsella rubella Capsella rubella
Cucsa.175450 Species Cucumis sativus Cucumis sativus
XP_644845.1 Species Dictyostelium discoideum Dictyostelium discoideum
Eucgr.A01265 Species Eucalyptus grandis Eucalyptus grandis
Esi0075_0052 Species Ectocarpus siliculosus Ectocarpus siliculosus cTP
Glyma03g19460 Species Glycine max Glycine max
Glyma11g14830 Species Glycine max Glycine max
Glyma12g06770 Species Glycine max Glycine max
gi|6912714|NP_036592|ref Species Homo sapiens Homo sapiens cTP
Medtr4g021710 Species Medicago truncatula Medicago truncatula
gi|85080688 Species Neurospora crassa Neurospora crassa cTP
LOC_Os12g38310 Species Oryza sativa Oryza sativa
Phpat.020G026400 Species Physcomitrella patens Physcomitrella patens
Phpat.024G058800 Species Physcomitrella patens Physcomitrella patens
Potri.012G039100 Species Populus trichocarpa Populus trichocarpa
29977.t000006 Species Ricinus communis Ricinus communis
YEL020W-A Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTP
74249 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400019201 Species Solanum tuberosum Solanum tuberosum
Vocar20008734 Species Volvox carteri Volvox carteri
GSVIVG01024961001 Species Vitis vinifera Vitis vinifera
GSVIVG01034172001 Species Vitis vinifera Vitis vinifera
GRMZM2G144101 Species Zea mays Zea mays

Sequences (FASTA)