ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM8 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 6
mTP 1
Perox 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT5G50810 Species Arabidopsis thaliana Arabidopsis thaliana
Bra013855 Species Brassica rapa Brassica rapa
Bra022760 Species Brassica rapa Brassica rapa
gi|17555782 Species Caenorhabditis elegans Caenorhabditis elegans cTP
CMI216CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae cTP
gi|159467707|ref|XP_001692033.1 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10027424 Species Capsella rubella Capsella rubella
Cucsa.157100 Species Cucumis sativus Cucumis sativus
Eucgr.B00077 Species Eucalyptus grandis Eucalyptus grandis
Esi_0243_0012 Species Ectocarpus siliculosus Ectocarpus siliculosus
Glyma04g37570 Species Glycine max Glycine max
Glyma05g38370 Species Glycine max Glycine max
Glyma06g17490 Species Glycine max Glycine max
gi|256773260 Species Homo sapiens Homo sapiens mTPcTP
gi|4758152 Species Homo sapiens Homo sapiens cTP
Medtr3g098820 Species Medicago truncatula Medicago truncatula
gi|164425234 Species Neurospora crassa Neurospora crassa cTP
LOC_Os08g42380 Species Oryza sativa Oryza sativa
LOC_Os11g03710 Species Oryza sativa Oryza sativa
Phpat.018G053300 Species Physcomitrella patens Physcomitrella patens
Phpat.022G034100 Species Physcomitrella patens Physcomitrella patens
Potri.012G103400 Species Populus trichocarpa Populus trichocarpa
Potri.015G102000 Species Populus trichocarpa Populus trichocarpa
30147.m014442|30147.t000713 Species Ricinus communis Ricinus communis
YJR135W-A Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTP
82076 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400027040|PGSC0003DMT400069565 Species Solanum tuberosum Solanum tuberosum
Vocar20003446 Species Volvox carteri Volvox carteri Perox
GSVIVG01008600001 Species Vitis vinifera Vitis vinifera
GSVIVG01033034001 Species Vitis vinifera Vitis vinifera
GRMZM2G075003 Species Zea mays Zea mays
GRMZM2G319878 Species Zea mays Zea mays
GRMZM5G801241 Species Zea mays Zea mays

Sequences (FASTA)