ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM50 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 104
cTP 32
SP 1
ER 1
Perox 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 4 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G55900 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTPmTPmTPmTP
Bra030827 Species Brassica rapa Brassica rapa cTPmTPmTPmTPmTP
Bra037095 Species Brassica rapa Brassica rapa cTPmTPmTPmTPmTP
gi|74966225 Species Caenorhabditis elegans Caenorhabditis elegans mTPmTP
CMN179CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae mTPmTPmTP
Cre12.g505950.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTPmTPmTPmTP
Carubv10009325m.g Species Capsella rubella Capsella rubella cTPcTPcTP
Cucsa.390900.1 Species Cucumis sativus Cucumis sativus cTPcTP
Q55C70|sp Species Dictyostelium discoideum Dictyostelium discoideum mTPcTPmTP
Eucgr.F02057.1 Species Eucalyptus grandis Eucalyptus grandis mTPmTPmTP
Esi0000_0471 Species Ectocarpus siliculosus Ectocarpus siliculosus mTPmTPmTP
Glyma02g46900.1 Species Glycine max Glycine max cTPmTPmTPmTPmTP
Glyma14g01810.1 Species Glycine max Glycine max cTPmTPmTPmTPmTP
gi|48526509 Species Homo sapiens Homo sapiens mTPcTP
Medtr5g095530.1 Species Medicago truncatula Medicago truncatula cTPmTPmTPmTPmTP
gi|164427612 Species Neurospora crassa Neurospora crassa cTP
LOC_Os01g55700.1 Species Oryza sativa Oryza sativa mTPmTPmTPmTP
LOC_Os05g43770.1 Species Oryza sativa Oryza sativa cTPmTPmTPmTPmTP
Phpat.008G082000.1 Species Physcomitrella patens Physcomitrella patens cTPmTPmTPmTP
Phpat.020G041400.1 Species Physcomitrella patens Physcomitrella patens cTPmTPmTPPeroxmTP
Potri.001G364500.1 Species Populus trichocarpa Populus trichocarpa cTPmTPmTPmTPmTP
Potri.001G366300.1 Species Populus trichocarpa Populus trichocarpa cTPmTPmTPmTPmTP
Potri.004G062900 Species Populus trichocarpa Populus trichocarpa cTPmTPcTPmTPcTP
Potri.011G072000 Species Populus trichocarpa Populus trichocarpa cTPmTPmTPmTPcTP
Potri.011G093000 Species Populus trichocarpa Populus trichocarpa mTPmTPmTPmTP
29629.m001396|29629.t000047 Species Ricinus communis Ricinus communis cTPmTPmTPmTPcTP
30026.m001487|30026.t000051 Species Ricinus communis Ricinus communis cTPmTPmTP
YPL063W Species Saccharomyces cerevisiae Saccharomyces cerevisiae mTPmTPmTP
124475 Species Selaginella moellendorffii Selaginella moellendorffii
77112 Species Selaginella moellendorffii Selaginella moellendorffii mTP
PGSC0003DMG400022178|PGSC0003DMT400057084 Species Solanum tuberosum Solanum tuberosum mTPmTPmTP
PGSC0003DMG400022178|PGSC0003DMT400057087 Species Solanum tuberosum Solanum tuberosum ER
Vocar20000934 Species Volvox carteri Volvox carteri mTPmTPmTP
GSVIVG01014657001|GSVIVT01014657001 Species Vitis vinifera Vitis vinifera cTPmTPmTPmTPmTP
GSVIVG01030074001|GSVIVT01030074001 Species Vitis vinifera Vitis vinifera cTPmTPmTPmTPmTP
GRMZM2G035651_T01 Species Zea mays Zea mays cTPmTPmTPmTPmTP
GRMZM2G441091_T01 Species Zea mays Zea mays SP
GRMZM5G896568_T01 Species Zea mays Zea mays cTPmTPmTPmTPmTP

Sequences (FASTA)