ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM50 CDD Results

Sequences for all species were analysed by CDD (Marchler-Bauer et al. 2011) using default settings. *Columns are described in the CDD documentation.

Domains Genes
NIF superfamily 38
NIF 31
FCP1_euk 5
CPDc 4
HIF-SF_euk 1
FCP1 1
QueryHit typePSSM-IDFromToE-ValueBitscoreAccessionShort nameIncompleteSuperfamily
AT1G55900 Species Arabidopsis thalianaspecific2147291913175.21835e-43148.142smart00577CPDc - cl17354
AT1G55900 Species Arabidopsis thalianasuperfamily2479081913175.21835e-43148.142cl17354NIF superfamily - -
Bra030827 Species Brassica rapaspecific2147291883145.61986e-41142.749smart00577CPDc - cl17354
Bra030827 Species Brassica rapasuperfamily2479081883145.61986e-41142.749cl17354NIF superfamily - -
Bra037095 Species Brassica rapaspecific2173281793188.76916e-37131.199pfam03031NIF - cl17354
Bra037095 Species Brassica rapasuperfamily2479081793188.76916e-37131.199cl17354NIF superfamily - -
gi|74966225 Species Caenorhabditis elegansspecific2147292463752.73771e-42147.757smart00577CPDc - cl17354
gi|74966225 Species Caenorhabditis eleganssuperfamily2479082463752.73771e-42147.757cl17354NIF superfamily - -
CMN179CT Species Cyanidioschyzon merolaespecific2173281482951.34085e-59192.831pfam03031NIF - cl17354
CMN179CT Species Cyanidioschyzon merolaesuperfamily2479081482951.34085e-59192.831cl17354NIF superfamily - -
CMN179CT Species Cyanidioschyzon merolaemulti-dom1313041482671.68755e-1161.1405TIGR02250FCP1_euk - -
Cre12.g505950.t1.2 Species Chlamydomonas reinhardtiispecific2173281933348.94402e-50166.252pfam03031NIF - cl17354
Cre12.g505950.t1.2 Species Chlamydomonas reinhardtiisuperfamily2479081933348.94402e-50166.252cl17354NIF superfamily - -
Cre12.g505950.t1.2 Species Chlamydomonas reinhardtiimulti-dom1313041943143.15494e-0851.5105TIGR02250FCP1_euk - -
Carubv10009325m.g Species Capsella rubellaspecific2173282183655.08614e-43148.918pfam03031NIF - cl17354
Carubv10009325m.g Species Capsella rubellasuperfamily2479082183655.08614e-43148.918cl17354NIF superfamily - -
Cucsa.390900.1 Species Cucumis sativusspecific2173281282759.75882e-42143.525pfam03031NIF - cl17354
Cucsa.390900.1 Species Cucumis sativussuperfamily2479081282759.75882e-42143.525cl17354NIF superfamily - -
Q55C70|sp Species Dictyostelium discoideumspecific2173281963414.5296e-2496.1457pfam03031NIF - cl17354
Q55C70|sp Species Dictyostelium discoideumsuperfamily2479081963414.5296e-2496.1457cl17354NIF superfamily - -
Eucgr.F02057.1 Species Eucalyptus grandisspecific2173281733201.18603e-35128.502pfam03031NIF - cl17354
Eucgr.F02057.1 Species Eucalyptus grandissuperfamily2479081733201.18603e-35128.502cl17354NIF superfamily - -
Esi0000_0471 Species Ectocarpus siliculosusspecific2173282473941.41677e-38138.518pfam03031NIF - cl17354
Esi0000_0471 Species Ectocarpus siliculosussuperfamily2479082473941.41677e-38138.518cl17354NIF superfamily - -
Glyma02g46900.1 Species Glycine maxspecific2173281502985.24949e-38134.28pfam03031NIF - cl17354
Glyma02g46900.1 Species Glycine maxsuperfamily2479081502985.24949e-38134.28cl17354NIF superfamily - -
Glyma14g01810.1 Species Glycine maxspecific2173281482962.05613e-38135.051pfam03031NIF - cl17354
Glyma14g01810.1 Species Glycine maxsuperfamily2479081482962.05613e-38135.051cl17354NIF superfamily - -
gi|48526509 Species Homo sapiensspecific2173282513984.22363e-40141.984pfam03031NIF - cl17354
gi|48526509 Species Homo sapienssuperfamily2479082513984.22363e-40141.984cl17354NIF superfamily - -
Medtr5g095530.1 Species Medicago truncatulaspecific2173281923406.71177e-38134.666pfam03031NIF - cl17354
Medtr5g095530.1 Species Medicago truncatulasuperfamily2479081923406.71177e-38134.666cl17354NIF superfamily - -
gi|164427612 Species Neurospora crassaspecific2173282123592.71757e-49167.793pfam03031NIF - cl17354
gi|164427612 Species Neurospora crassasuperfamily2479082123592.71757e-49167.793cl17354NIF superfamily - -
LOC_Os01g55700.1 Species Oryza sativaspecific2173281763231.36534e-42146.992pfam03031NIF - cl17354
LOC_Os01g55700.1 Species Oryza sativasuperfamily2479081763231.36534e-42146.992cl17354NIF superfamily - -
LOC_Os05g43770.1 Species Oryza sativaspecific2173281813284.72499e-43148.148pfam03031NIF - cl17354
LOC_Os05g43770.1 Species Oryza sativasuperfamily2479081813284.72499e-43148.148cl17354NIF superfamily - -
Phpat.008G082000.1 Species Physcomitrella patensspecific2173281893364.05421e-40140.829pfam03031NIF - cl17354
Phpat.008G082000.1 Species Physcomitrella patenssuperfamily2479081893364.05421e-40140.829cl17354NIF superfamily - -
Phpat.020G041400.1 Species Physcomitrella patensspecific2173281903375.51134e-42145.836pfam03031NIF - cl17354
Phpat.020G041400.1 Species Physcomitrella patenssuperfamily2479081903375.51134e-42145.836cl17354NIF superfamily - -
Potri.001G364500.1 Species Populus trichocarpaspecific2173281703223.37045e-40140.444pfam03031NIF - cl17354
Potri.001G364500.1 Species Populus trichocarpasuperfamily2479081703223.37045e-40140.444cl17354NIF superfamily - -
Potri.001G366300.1 Species Populus trichocarpaspecific2173281703223.37045e-40140.444pfam03031NIF - cl17354
Potri.001G366300.1 Species Populus trichocarpasuperfamily2479081703223.37045e-40140.444cl17354NIF superfamily - -
Potri.004G062900 Species Populus trichocarpasuperfamily2479081122721.97852e-55180.952cl17354NIF superfamily - -
Potri.004G062900 Species Populus trichocarpamulti-dom1313041172483.88712e-1879.6301TIGR02250FCP1_euk - -
Potri.011G072000 Species Populus trichocarpasuperfamily2479081112711.9889e-63199.442cl17354NIF superfamily - -
Potri.011G072000 Species Populus trichocarpamulti-dom1313041162473.97171e-1673.0817TIGR02250FCP1_euk - -
Potri.011G093000 Species Populus trichocarpaspecific2173281713234.56006e-40140.444pfam03031NIF - cl17354
Potri.011G093000 Species Populus trichocarpasuperfamily2479081713234.56006e-40140.444cl17354NIF superfamily - -
29629.m001396|29629.t000047 Species Ricinus communisspecific2147292122963.19422e-2599.6071smart00577CPDcCcl17354
29629.m001396|29629.t000047 Species Ricinus communissuperfamily2479082122963.19422e-2599.6071cl17354NIF superfamilyC -
30026.m001487|30026.t000051 Species Ricinus communisspecific2338011182781.06947e-64202.909TIGR02251HIF-SF_euk - cl17354
30026.m001487|30026.t000051 Species Ricinus communissuperfamily2479081182781.06947e-64202.909cl17354NIF superfamily - -
30026.m001487|30026.t000051 Species Ricinus communismulti-dom1313041232541.9147e-1982.3265TIGR02250FCP1_euk - -
YPL063W Species Saccharomyces cerevisiaespecific2173281953394.07703e-51172.03pfam03031NIF - cl17354
YPL063W Species Saccharomyces cerevisiaesuperfamily2479081953394.07703e-51172.03cl17354NIF superfamily - -
YPL063W Species Saccharomyces cerevisiaemulti-dom22751713541.72343e-90283.582COG5190FCP1 - -
124475 Species Selaginella moellendorffiispecific217328241717.12432e-43143.14pfam03031NIF - cl17354
124475 Species Selaginella moellendorffiisuperfamily247908241717.12432e-43143.14cl17354NIF superfamily - -
77112 Species Selaginella moellendorffiispecific217328782261.47279e-54174.341pfam03031NIF - cl17354
77112 Species Selaginella moellendorffiisuperfamily247908782261.47279e-54174.341cl17354NIF superfamily - -
PGSC0003DMG400022178|PGSC0003DMT400057087 Species Solanum tuberosumspecific2173281603079.40595e-42144.296pfam03031NIF - cl17354
PGSC0003DMG400022178|PGSC0003DMT400057087 Species Solanum tuberosumsuperfamily2479081603079.40595e-42144.296cl17354NIF superfamily - -
PGSC0003DMG400022178|PGSC0003DMT400057087 Species Solanum tuberosumspecific217328521999.03089e-42141.214pfam03031NIF - cl17354
PGSC0003DMG400022178|PGSC0003DMT400057087 Species Solanum tuberosumsuperfamily247908521999.03089e-42141.214cl17354NIF superfamily - -
Vocar20000934 Species Volvox carterispecific2173281843042.28421e-40140.829pfam03031NIF - cl17354
Vocar20000934 Species Volvox carterisuperfamily2479081843042.28421e-40140.829cl17354NIF superfamily - -
GSVIVG01014657001|GSVIVT01014657001 Species Vitis viniferaspecific2173281863332.60253e-43148.918pfam03031NIF - cl17354
GSVIVG01014657001|GSVIVT01014657001 Species Vitis viniferasuperfamily2479081863332.60253e-43148.918cl17354NIF superfamily - -
GSVIVG01030074001|GSVIVT01030074001 Species Vitis viniferaspecific2173281773244.093e-42145.836pfam03031NIF - cl17354
GSVIVG01030074001|GSVIVT01030074001 Species Vitis viniferasuperfamily2479081773244.093e-42145.836cl17354NIF superfamily - -
GRMZM2G035651_T01 Species Zea maysspecific2173281883366.11576e-40140.058pfam03031NIF - cl17354
GRMZM2G035651_T01 Species Zea mayssuperfamily2479081883366.11576e-40140.058cl17354NIF superfamily - -
GRMZM2G441091_T01 Species Zea maysspecific21732841491.69131e-31113.094pfam03031NIF - cl17354
GRMZM2G441091_T01 Species Zea mayssuperfamily24790841491.69131e-31113.094cl17354NIF superfamily - -
GRMZM5G896568_T01 Species Zea maysspecific2173281743217.00959e-46155.466pfam03031NIF - cl17354
GRMZM5G896568_T01 Species Zea mayssuperfamily2479081743217.00959e-46155.466cl17354NIF superfamily - -

Sequences (FASTA)