ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM44 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
mTP 95
Perox 12
cTP 12
SP 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

mTP predicted plus 3 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT2G20510 Species Arabidopsis thaliana Arabidopsis thaliana mTPmTPmTPPeroxmTP
AT2G36070 Species Arabidopsis thaliana Arabidopsis thaliana cTPmTPmTPmTPPeroxmTP
Bra036478 Species Brassica rapa Brassica rapa mTPmTPmTPmTP
Bra036674 Species Brassica rapa Brassica rapa cTPmTPmTPmTPPeroxmTP
gi|17508985 Species Caenorhabditis elegans Caenorhabditis elegans mTPmTPmTP
CMJ253CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae mTPmTPmTP
Cre16.g660800.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii cTPmTPmTPcTPmTP
Carubv10015970m.g Species Capsella rubella Capsella rubella mTPmTPmTPmTP
Carubv10024977m.g Species Capsella rubella Capsella rubella mTPmTPmTPPeroxmTP
Cucsa.280740.1 Species Cucumis sativus Cucumis sativus mTPmTP
Eucgr.B01552.1 Species Eucalyptus grandis Eucalyptus grandis SPmTPmTP
Eucgr.G01944.1 Species Eucalyptus grandis Eucalyptus grandis mTP
Esi0086_0051 Species Ectocarpus siliculosus Ectocarpus siliculosus mTPmTPmTP
Glyma04g12120.1 Species Glycine max Glycine max mTPmTPmTPPeroxmTP
Glyma09g00505.1 Species Glycine max Glycine max Perox
gi|33636719 Species Homo sapiens Homo sapiens mTPmTPmTP
Medtr2g083690.1 Species Medicago truncatula Medicago truncatula mTPmTPmTPPeroxmTP
Medtr4g029490.1 Species Medicago truncatula Medicago truncatula mTPmTPmTPPeroxmTP
gi|85117796 Species Neurospora crassa Neurospora crassa mTPcTPmTP
LOC_Os07g22700.1 Species Oryza sativa Oryza sativa mTPmTPmTPmTP
Phpat.004G075900.1 Species Physcomitrella patens Physcomitrella patens cTPmTPmTPmTPmTP
Phpat.012G024100.1 Species Physcomitrella patens Physcomitrella patens cTPmTPmTPPeroxmTP
Potri.002G038300.1 Species Populus trichocarpa Populus trichocarpa cTPmTPmTPmTPmTP
Potri.005G224500.1 Species Populus trichocarpa Populus trichocarpa cTPmTPmTPmTPPeroxmTP
30005.m001292|30005.t000058 Species Ricinus communis Ricinus communis cTPmTPmTPmTPmTP
YIL022W Species Saccharomyces cerevisiae Saccharomyces cerevisiae mTPmTPmTP
83588 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400022489|PGSC0003DMT400057909 Species Solanum tuberosum Solanum tuberosum
Vocar20010708m.g Species Volvox carteri Volvox carteri cTPmTPmTPmTP
GSVIVG01028335001|GSVIVT01028335001 Species Vitis vinifera Vitis vinifera cTPmTPmTPmTPPeroxmTP
GRMZM2G095695_T02 Species Zea mays Zea mays mTPmTPmTPPeroxmTP

Sequences (FASTA)