ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM23 Transmembrane Helix Domain Predictions

Num_PredHel indicates the number of predicted transmembrane helix domains calculated by DAS and TMHMM predictors (for methods, see MPIC paper). A tally of both predictors is shown first.

Num_PredHel Frequency
1 31
2 30
3 7
4 1

1 predicted Species DAS_Num_PredHelTMHMM_Num_PredHel
AT1G17530 Species Arabidopsis thaliana Arabidopsis thaliana 2
AT1G72750 Species Arabidopsis thaliana Arabidopsis thaliana 2
AT3G04800 Species Arabidopsis thaliana Arabidopsis thaliana 2
Bra008046 Species Brassica rapa Brassica rapa 12
Bra016036 Species Brassica rapa Brassica rapa 22
Bra016597 Species Brassica rapa Brassica rapa 12
Bra025966 Species Brassica rapa Brassica rapa 13
gi|17506651 Species Caenorhabditis elegans Caenorhabditis elegans 1
CMO311CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae 23
Cre10.g434250.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii 2
Carubv10012124m.g Species Capsella rubella Capsella rubella
Carubv10016391m.g Species Capsella rubella Capsella rubella 1
Carubv10020993m.g Species Capsella rubella Capsella rubella 1
Cucsa.291760.1 Species Cucumis sativus Cucumis sativus 1
Cucsa.360430.1 Species Cucumis sativus Cucumis sativus 12
gi|66806813 Species Dictyostelium discoideum Dictyostelium discoideum 43
Eucgr.B01693.1 Species Eucalyptus grandis Eucalyptus grandis 2
Eucgr.B02109.1 Species Eucalyptus grandis Eucalyptus grandis 1
Eucgr.F03162.1 Species Eucalyptus grandis Eucalyptus grandis 1
gi|298712788 Species Ectocarpus siliculosus Ectocarpus siliculosus 1
Glyma10g30280.1 Species Glycine max Glycine max 1
Glyma13g42300.1 Species Glycine max Glycine max 12
Glyma15g03070.1 Species Glycine max Glycine max 22
Glyma20g36660.1 Species Glycine max Glycine max 1
gi|5454122 Species Homo sapiens Homo sapiens 13
Medtr1g081230.1 Species Medicago truncatula Medicago truncatula 22
Medtr2g099550.1 Species Medicago truncatula Medicago truncatula 22
Medtr8g018780.1 Species Medicago truncatula Medicago truncatula 12
gi|85084169|ref|XP_957257.1 Species Neurospora crassa Neurospora crassa 2
LOC_Os02g45100.1 Species Oryza sativa Oryza sativa 1
LOC_Os03g02390.1 Species Oryza sativa Oryza sativa 1
LOC_Os04g47900.1 Species Oryza sativa Oryza sativa
LOC_Os10g37530.1 Species Oryza sativa Oryza sativa 2
Phpat.011G020000.1 Species Physcomitrella patens Physcomitrella patens 12
Phpat.011G020100.1 Species Physcomitrella patens Physcomitrella patens 12
Potri.001G198100.1 Species Populus trichocarpa Populus trichocarpa 13
Potri.003G044100.1 Species Populus trichocarpa Populus trichocarpa 13
Potri.005G051800.1 Species Populus trichocarpa Populus trichocarpa 22
Potri.013G039200.1 Species Populus trichocarpa Populus trichocarpa 12
29706.m001325|29706.t000055 Species Ricinus communis Ricinus communis 12
30128.m008609|30128.t000070 Species Ricinus communis Ricinus communis 1
YNR017W Species Saccharomyces cerevisiae Saccharomyces cerevisiae 1
73724 Species Selaginella moellendorffii Selaginella moellendorffii
85570 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400002488|PGSC0003DMT400006368 Species Solanum tuberosum Solanum tuberosum 11
PGSC0003DMG400043220|PGSC0003DMT400093649 Species Solanum tuberosum Solanum tuberosum 12
GSVIVG01016813001|GSVIVT01016813001 Species Vitis vinifera Vitis vinifera
GSVIVG01035979001|GSVIVT01035979001 Species Vitis vinifera Vitis vinifera 22
GRMZM2G064600_T01 Species Zea mays Zea mays 1
GRMZM2G077760_T01 Species Zea mays Zea mays 1
GRMZM2G368041_T01 Species Zea mays Zea mays 3

Sequences (FASTA)