ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM23 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 9
Perox 8
mTP 2
ER 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 3 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1G17530 Species Arabidopsis thaliana Arabidopsis thaliana Perox
AT1G72750 Species Arabidopsis thaliana Arabidopsis thaliana
AT3G04800 Species Arabidopsis thaliana Arabidopsis thaliana
Bra008046 Species Brassica rapa Brassica rapa
Bra016036 Species Brassica rapa Brassica rapa
Bra016597 Species Brassica rapa Brassica rapa
Bra025966 Species Brassica rapa Brassica rapa Perox
gi|17506651 Species Caenorhabditis elegans Caenorhabditis elegans cTP
CMO311CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae mTPcTPPerox
Cre10.g434250.t1.2 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii Perox
Carubv10012124m.g Species Capsella rubella Capsella rubella
Carubv10016391m.g Species Capsella rubella Capsella rubella
Carubv10020993m.g Species Capsella rubella Capsella rubella
Cucsa.291760.1 Species Cucumis sativus Cucumis sativus
Cucsa.360430.1 Species Cucumis sativus Cucumis sativus
gi|66806813 Species Dictyostelium discoideum Dictyostelium discoideum cTP
Eucgr.B01693.1 Species Eucalyptus grandis Eucalyptus grandis
Eucgr.B02109.1 Species Eucalyptus grandis Eucalyptus grandis
Eucgr.F03162.1 Species Eucalyptus grandis Eucalyptus grandis
gi|298712788 Species Ectocarpus siliculosus Ectocarpus siliculosus cTP
Glyma10g30280.1 Species Glycine max Glycine max
Glyma13g42300.1 Species Glycine max Glycine max
Glyma15g03070.1 Species Glycine max Glycine max
Glyma20g36660.1 Species Glycine max Glycine max
gi|5454122 Species Homo sapiens Homo sapiens cTPPerox
Medtr1g081230.1 Species Medicago truncatula Medicago truncatula
Medtr2g099550.1 Species Medicago truncatula Medicago truncatula
Medtr8g018780.1 Species Medicago truncatula Medicago truncatula
gi|85084169|ref|XP_957257.1 Species Neurospora crassa Neurospora crassa cTP
LOC_Os02g45100.1 Species Oryza sativa Oryza sativa
LOC_Os03g02390.1 Species Oryza sativa Oryza sativa Perox
LOC_Os04g47900.1 Species Oryza sativa Oryza sativa
LOC_Os10g37530.1 Species Oryza sativa Oryza sativa
Phpat.011G020000.1 Species Physcomitrella patens Physcomitrella patens
Phpat.011G020100.1 Species Physcomitrella patens Physcomitrella patens
Potri.001G198100.1 Species Populus trichocarpa Populus trichocarpa
Potri.003G044100.1 Species Populus trichocarpa Populus trichocarpa
Potri.005G051800.1 Species Populus trichocarpa Populus trichocarpa
Potri.013G039200.1 Species Populus trichocarpa Populus trichocarpa
29706.m001325|29706.t000055 Species Ricinus communis Ricinus communis
30128.m008609|30128.t000070 Species Ricinus communis Ricinus communis
YNR017W Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTP
73724 Species Selaginella moellendorffii Selaginella moellendorffii Perox
85570 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG400002488|PGSC0003DMT400006368 Species Solanum tuberosum Solanum tuberosum
PGSC0003DMG400043220|PGSC0003DMT400093649 Species Solanum tuberosum Solanum tuberosum
GSVIVG01016813001|GSVIVT01016813001 Species Vitis vinifera Vitis vinifera cTPcTPERmTP
GSVIVG01035979001|GSVIVT01035979001 Species Vitis vinifera Vitis vinifera
GRMZM2G064600_T01 Species Zea mays Zea mays
GRMZM2G077760_T01 Species Zea mays Zea mays Perox
GRMZM2G368041_T01 Species Zea mays Zea mays

Sequences (FASTA)