ARC Centre of Excellence for Plant Energy Biology

MPIC — TIM22 Targeting Predictions

Computational targeting prediction programs were run en bloc for all included species using each algorithm’s default parameters applicable per species kingdom (Boden and Hawkins 2005; Claros 1995; Emanuelsson et al. 2000; Emanuelsson et al. 1999; Neuberger et al. 2003; Small et al. 2004).

Prediction Frequency
cTP 13
mTP 1
Perox 1

Abbreviations

cTP: chloroplast targeting peptide (plants only)
ER: endoplasmic reticulum
mTP: mitochrondrial targeting peptide
SP: signal peptide / secretory pathway

cTP predicted plus 2 others Species ChloroPMitoProt2PProwlerPredotarPTS1TargetP
AT1g18320 Species Arabidopsis thaliana Arabidopsis thaliana
AT3G10110 Species Arabidopsis thaliana Arabidopsis thaliana
Bra016560 Species Brassica rapa Brassica rapa
Bra031026 Species Brassica rapa Brassica rapa
gi|17532463 Species Caenorhabditis elegans Caenorhabditis elegans cTP
CMS209CT Species Cyanidioschyzon merolae Cyanidioschyzon merolae cTP
Cre01.g021050 Species Chlamydomonas reinhardtii Chlamydomonas reinhardtii
Carubv10010466 Species Capsella rubella Capsella rubella
Cucsa.151920 Species Cucumis sativus Cucumis sativus cTPcTPcTP
gi|66810255 Species Dictyostelium discoideum Dictyostelium discoideum cTP
Eucgr.K02762 Species Eucalyptus grandis Eucalyptus grandis
Esi0063_0018 Species Ectocarpus siliculosus Ectocarpus siliculosus cTP
Glyma09g35780 Species Glycine max Glycine max
Glyma12g01980 Species Glycine max Glycine max
gi|56606061 Species Homo sapiens Homo sapiens cTP
Medtr4g077950 Species Medicago truncatula Medicago truncatula
Medtr4g078050.1 Species Medicago truncatula Medicago truncatula
gi|164426913 Ncrassa Species Neurospora crassa Neurospora crassa cTPmTP
LOC_Os03g18500 Species Oryza sativa Oryza sativa
Phpat.012G063000 Species Physcomitrella patens Physcomitrella patens
Potri.001G281200 Species Populus trichocarpa Populus trichocarpa
Potri.009G076400 Species Populus trichocarpa Populus trichocarpa cTP
30209.m001533|30209.t000032 Species Ricinus communis Ricinus communis Perox
YDL217C Species Saccharomyces cerevisiae Saccharomyces cerevisiae cTP
230551 Species Selaginella moellendorffii Selaginella moellendorffii
PGSC0003DMG402019636 Species Solanum tuberosum Solanum tuberosum
Vocar20010161 Species Volvox carteri Volvox carteri cTPcTP
GSVIVG01024670001 Species Vitis vinifera Vitis vinifera
GRMZM2G007080 Species Zea mays Zea mays
GRMZM2G357152 Species Zea mays Zea mays

Sequences (FASTA)